Information for 3-CAGGACCWTGGABAGC (Motif 2)

A G T C C G T A A C T G T A C G G T C A A G T C A G T C C G A T G C A T C T A G A T C G C T G A A G T C C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T T C A G A G C T A T G C A G T C C G T A C G T A A C T G A C T G A C G T A T G C G T A C A C G T A C T G
p-value:1e-21
log p-value:-5.019e+01
Information Content per bp:1.791
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.37%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.7 +/- 7.1bp
Average Position of motif in Background63.4 +/- 16.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--CAGGACCWTGGABAGC---
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A G T C C G T A A C T G T A C G G T C A A G T C A G T C C G A T G C A T C T A G A T C G C T G A A G T C C G T A A C T G A G T C A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-CAGGACCWTGGABAGC---
TCAGCACCATGGACAGCTCC
 A C G T A G T C C G T A A C T G T A C G G T C A A G T C A G T C C G A T G C A T C T A G A T C G C T G A A G T C C G T A A C T G A G T C A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.52
Offset:12
Orientation:forward strand
Alignment:CAGGACCWTGGABAGC-
------------CAGCC
 A G T C C G T A A C T G T A C G G T C A A G T C A G T C C G A T G C A T C T A G A T C G C T G A A G T C C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

PB0014.1_Esrra_1/Jaspar

Match Rank:4
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CAGGACCWTGGABAGC
NNNNATGACCTTGANTN--
 A C G T A C G T A C G T A G T C C G T A A C T G T A C G G T C A A G T C A G T C C G A T G C A T C T A G A T C G C T G A A G T C C G T A A C T G A G T C
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A A C G T A C G T

Esrra/MA0592.2/Jaspar

Match Rank:5
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CAGGACCWTGGABAGC
-ATGACCTTGAA----
 A G T C C G T A A C T G T A C G G T C A A G T C A G T C C G A T G C A T C T A G A T C G C T G A A G T C C G T A A C T G A G T C
A C G T C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.50
Offset:5
Orientation:forward strand
Alignment:CAGGACCWTGGABAGC
-----CCAGGAACAG-
 A G T C C G T A A C T G T A C G G T C A A G T C A G T C C G A T G C A T C T A G A T C G C T G A A G T C C G T A A C T G A G T C
A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--CAGGACCWTGGABAGC--
TGCAGTTCCNNNNNTGGCCA
 A C G T A C G T A G T C C G T A A C T G T A C G G T C A A G T C A G T C C G A T G C A T C T A G A T C G C T G A A G T C C G T A A C T G A G T C A C G T A C G T
C G A T T A C G G A T C G C T A T C A G G A C T C G A T G T A C G A T C G T C A T C G A T G A C C G T A C T A G G A C T C T A G C T A G G T A C A G T C C G T A

PB0158.1_Rfx3_2/Jaspar

Match Rank:8
Score:0.47
Offset:-1
Orientation:forward strand
Alignment:-CAGGACCWTGGABAGC------
ACTGACCCTTGGTTACCACAAAG
 A C G T A G T C C G T A A C T G T A C G G T C A A G T C A G T C C G A T G C A T C T A G A T C G C T G A A G T C C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.47
Offset:2
Orientation:reverse strand
Alignment:CAGGACCWTGGABAGC
--TGACCTTGAN----
 A G T C C G T A A C T G T A C G G T C A A G T C A G T C C G A T G C A T C T A G A T C G C T G A A G T C C G T A A C T G A G T C
A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T A C G T

Znf423/MA0116.1/Jaspar

Match Rank:10
Score:0.47
Offset:1
Orientation:forward strand
Alignment:CAGGACCWTGGABAGC
-GGCACCCAGGGGTGC
 A G T C C G T A A C T G T A C G G T C A A G T C A G T C C G A T G C A T C T A G A T C G C T G A A G T C C G T A A C T G A G T C
A C G T T C A G A T C G G T A C G T C A A G T C A G T C G A T C C G T A C T A G A C T G A C T G A C T G A C G T A C T G G T A C