Information for 1-YAGYGCCACCTAGTGG (Motif 1)

A G C T C T G A A T C G G A C T C T A G G A T C A G T C G T C A A G T C G T A C G C A T C T G A A T C G G C A T A C T G A C T G
Reverse Opposite:
T G A C G T A C C G T A T A G C G A C T C G T A A C T G C T A G C A G T A C T G C T A G G A T C C T G A T A G C G A C T T C G A
p-value:1e-257
log p-value:-5.939e+02
Information Content per bp:1.683
Number of Target Sequences with motif244.0
Percentage of Target Sequences with motif33.52%
Number of Background Sequences with motif657.7
Percentage of Background Sequences with motif1.36%
Average Position of motif in Targets51.1 +/- 15.5bp
Average Position of motif in Background49.5 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-YAGYGCCACCTAGTGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A G C T C T G A A T C G G A C T C T A G G A T C A G T C G T C A A G T C G T A C G C A T C T G A A T C G G C A T A C T G A C T G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:YAGYGCCACCTAGTGG---
TAGCGCCCCCTGGTGGCCA
 A G C T C T G A A T C G G A C T C T A G G A T C A G T C G T C A A G T C G T A C G C A T C T G A A T C G G C A T A C T G A C T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.94
Offset:-3
Orientation:forward strand
Alignment:---YAGYGCCACCTAGTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A G C T C T G A A T C G G A C T C T A G G A T C A G T C G T C A A G T C G T A C G C A T C T G A A T C G G C A T A C T G A C T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.60
Offset:4
Orientation:forward strand
Alignment:YAGYGCCACCTAGTGG
----GCCATCTGTT--
 A G C T C T G A A T C G G A C T C T A G G A T C A G T C G T C A A G T C G T A C G C A T C T G A A T C G G C A T A C T G A C T G
A C G T A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--YAGYGCCACCTAGTGG
GGTCCCGCCCCCTTCTC-
 A C G T A C G T A G C T C T G A A T C G G A C T C T A G G A T C A G T C G T C A A G T C G T A C G C A T C T G A A T C G G C A T A C T G A C T G
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:YAGYGCCACCTAGTGG--
---GGCCYCCTGCTGDGH
 A G C T C T G A A T C G G A C T C T A G G A T C A G T C G T C A A G T C G T A C G C A T C T G A A T C G G C A T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:YAGYGCCACCTAGTGG
--ATGCCAACC-----
 A G C T C T G A A T C G G A C T C T A G G A T C A G T C G T C A A G T C G T A C G C A T C T G A A T C G G C A T A C T G A C T G
A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:YAGYGCCACCTAGTGG-
-----CCCCCTGCTGTG
 A G C T C T G A A T C G G A C T C T A G G A T C A G T C G T C A A G T C G T A C G C A T C T G A A T C G G C A T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Znf423/MA0116.1/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:forward strand
Alignment:YAGYGCCACCTAGTGG---
----GGCACCCAGGGGTGC
 A G C T C T G A A T C G G A C T C T A G G A T C A G T C G T C A A G T C G T A C G C A T C T G A A T C G G C A T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G A T C G G T A C G T C A A G T C A G T C G A T C C G T A C T A G A C T G A C T G A C T G A C G T A C T G G T A C

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:YAGYGCCACCTAGTGG
---TGACACCT-----
 A G C T C T G A A T C G G A C T C T A G G A T C A G T C G T C A A G T C G T A C G C A T C T G A A T C G G C A T A C T G A C T G
A C G T A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T