Information for 6-TGCTAATTAC (Motif 4)

C G A T A C T G A G T C C G A T C T G A G C T A A C G T A C G T C G T A A T G C
Reverse Opposite:
T A C G A C G T T G C A C G T A C G A T A G C T C G T A A C T G G T A C C G T A
p-value:1e-19
log p-value:-4.517e+01
Information Content per bp:1.849
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif3.62%
Number of Background Sequences with motif145.9
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets55.9 +/- 28.8bp
Average Position of motif in Background51.2 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0081.1_Pdx1/Jaspar

Match Rank:1
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---TGCTAATTAC---
NTGNGCTAATTACCNN
 A C G T A C G T A C G T C G A T A C T G A G T C C G A T C T G A G C T A A C G T A C G T C G T A A T G C A C G T A C G T A C G T
G T C A G A C T A T C G C G T A C T A G A T G C G A C T T G C A G C T A C A G T A C G T C T G A T A G C G A T C A C G T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:2
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:TGCTAATTAC
-NCTAATTA-
 C G A T A C T G A G T C C G A T C T G A G C T A A C G T A C G T C G T A A T G C
A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T

EMX2/MA0886.1/Jaspar

Match Rank:3
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:TGCTAATTAC-
-NCTAATTANN
 C G A T A C T G A G T C C G A T C T G A G C T A A C G T A C G T C G T A A T G C A C G T
A C G T T A C G A G T C A C G T G T C A C G T A A C G T C A G T C T G A T A C G A G T C

EVX2/MA0888.1/Jaspar

Match Rank:4
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:TGCTAATTAC-
-NNTAATTANN
 C G A T A C T G A G T C C G A T C T G A G C T A A C G T A C G T C G T A A T G C A C G T
A C G T T A C G A T G C G A C T T C G A T G C A A G C T A C G T C T G A A T G C A T G C

VAX2/MA0723.1/Jaspar

Match Rank:5
Score:0.81
Offset:2
Orientation:forward strand
Alignment:TGCTAATTAC
--CTAATTAC
 C G A T A C T G A G T C C G A T C T G A G C T A A C G T A C G T C G T A A T G C
A C G T A C G T A G T C G A C T G T C A G C T A C G A T C A G T C T G A A G T C

VSX2/MA0726.1/Jaspar

Match Rank:6
Score:0.80
Offset:2
Orientation:forward strand
Alignment:TGCTAATTAC
--CTAATTAG
 C G A T A C T G A G T C C G A T C T G A G C T A A C G T A C G T C G T A A T G C
A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G

EVX1/MA0887.1/Jaspar

Match Rank:7
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:TGCTAATTAC-
-GNTAATTANN
 C G A T A C T G A G T C C G A T C T G A G C T A A C G T A C G T C G T A A T G C A C G T
A C G T A T C G T A G C G A C T C T G A T G C A A G C T A G C T C T G A A T G C A G T C

VAX1/MA0722.1/Jaspar

Match Rank:8
Score:0.80
Offset:2
Orientation:forward strand
Alignment:TGCTAATTAC
--CTAATTAC
 C G A T A C T G A G T C C G A T C T G A G C T A A C G T A C G T C G T A A T G C
A C G T A C G T A G T C G A C T G T C A G T C A C G A T C A G T C T G A G A T C

MEOX1/MA0661.1/Jaspar

Match Rank:9
Score:0.80
Offset:1
Orientation:forward strand
Alignment:TGCTAATTAC-
-GCTAATTAAC
 C G A T A C T G A G T C C G A T C T G A G C T A A C G T A C G T C G T A A T G C A C G T
A C G T T C A G T A G C G A C T T G C A C G T A G A C T A C G T C T G A G T C A T A G C

PH0052.1_Hoxa5/Jaspar

Match Rank:10
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---TGCTAATTAC---
NTGAGCTAATTACCNT
 A C G T A C G T A C G T C G A T A C T G A G T C C G A T C T G A G C T A A C G T A C G T C G T A A T G C A C G T A C G T A C G T
G A T C G C A T C A T G C G T A C T A G A T G C G A C T G T C A G T C A A C G T A C G T C T G A T G A C G A T C A C T G A G C T