Information for 11-AGAGGCCATTGTG (Motif 17)

C G T A A C T G C G T A A C T G A C T G A G T C A G T C C G T A C A G T A C G T A C T G A C G T C T A G
Reverse Opposite:
A G T C C G T A G T A C C G T A G C T A C G A T T C A G C T A G A G T C G T A C C G A T G T A C A C G T
p-value:1e-11
log p-value:-2.605e+01
Information Content per bp:1.796
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.61%
Number of Background Sequences with motif41.9
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets39.6 +/- 23.9bp
Average Position of motif in Background58.1 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGAGGCCATTGTG
AGGVNCCTTTGT-
 C G T A A C T G C G T A A C T G A C T G A G T C A G T C C G T A C A G T A C G T A C T G A C G T C T A G
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AGAGGCCATTGTG----
--NNNCCATTGTGTNAN
 C G T A A C T G C G T A A C T G A C T G A G T C A G T C C G T A C A G T A C G T A C T G A C G T C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:AGAGGCCATTGTG-
----NCCATTGTTY
 C G T A A C T G C G T A A C T G A C T G A G T C A G T C C G T A C A G T A C G T A C T G A C G T C T A G A C G T
A C G T A C G T A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.64
Offset:5
Orientation:forward strand
Alignment:AGAGGCCATTGTG--
-----CCATTGTTYB
 C G T A A C T G C G T A A C T G A C T G A G T C A G T C C G T A C A G T A C G T A C T G A C G T C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.64
Offset:5
Orientation:forward strand
Alignment:AGAGGCCATTGTG
-----CCWTTGTY
 C G T A A C T G C G T A A C T G A C T G A G T C A G T C C G T A C A G T A C G T A C T G A C G T C T A G
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.64
Offset:5
Orientation:forward strand
Alignment:AGAGGCCATTGTG
-----CCTTTGTT
 C G T A A C T G C G T A A C T G A C T G A G T C A G T C C G T A C A G T A C G T A C T G A C G T C T A G
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Sox17/MA0078.1/Jaspar

Match Rank:7
Score:0.63
Offset:4
Orientation:forward strand
Alignment:AGAGGCCATTGTG
----CTCATTGTC
 C G T A A C T G C G T A A C T G A C T G A G T C A G T C C G T A C A G T A C G T A C T G A C G T C T A G
A C G T A C G T A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.62
Offset:4
Orientation:forward strand
Alignment:AGAGGCCATTGTG-
----NCCATTGTTC
 C G T A A C T G C G T A A C T G A C T G A G T C A G T C C G T A C A G T A C G T A C T G A C G T C T A G A C G T
A C G T A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.62
Offset:5
Orientation:forward strand
Alignment:AGAGGCCATTGTG--
-----CCATTGTTNY
 C G T A A C T G C G T A A C T G A C T G A G T C A G T C C G T A C A G T A C G T A C T G A C G T C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

SOX9/MA0077.1/Jaspar

Match Rank:10
Score:0.62
Offset:5
Orientation:forward strand
Alignment:AGAGGCCATTGTG-
-----CCATTGTTC
 C G T A A C T G C G T A A C T G A C T G A G T C A G T C C G T A C A G T A C G T A C T G A C G T C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C