Information for 14-GTCACGGAGTTTA (Motif 22)

A T C G A C G T A G T C G T C A A G T C A C T G A C T G C G T A A C T G A C G T A G C T A C G T C T G A
Reverse Opposite:
A G C T C G T A C T G A C G T A A G T C C G A T A G T C A G T C A C T G A C G T A C T G C G T A A T G C
p-value:1e-5
log p-value:-1.187e+01
Information Content per bp:1.911
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.38%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.8 +/- 23.2bp
Average Position of motif in Background17.9 +/- 6.6bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXRA::VDR/MA0074.1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GTCACGGAGTTTA
GGGTCAACGAGTTCA
 A C G T A C G T A T C G A C G T A G T C G T C A A G T C A C T G A C T G C G T A A C T G A C G T A G C T A C G T C T G A
C T A G A C T G A C T G A C G T A G T C C T G A G C A T A G T C C T A G C T A G A C T G A C G T C G A T A G T C T C G A

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:2
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GTCACGGAGTTTA---
NGAGGTCANNGAGTTCANNN
 A C G T A C G T A C G T A C G T A T C G A C G T A G T C G T C A A G T C A C T G A C T G C G T A A C T G A C G T A G C T A C G T C T G A A C G T A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

Pax2/MA0067.1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GTCACGGAGTTTA
AGTCACGC------
 A C G T A T C G A C G T A G T C G T C A A G T C A C T G A C T G C G T A A C T G A C G T A G C T A C G T C T G A
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0161.1_Rxra_2/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GTCACGGAGTTTA----
-TCGCGAAGGTTGTACT
 A T C G A C G T A G T C G T C A A G T C A C T G A C T G C G T A A C T G A C G T A G C T A C G T C T G A A C G T A C G T A C G T A C G T
A C G T C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GTCACGGAGTTTA-
GTCACGCTCNCTGA
 A T C G A C G T A G T C G T C A A G T C A C T G A C T G C G T A A C T G A C G T A G C T A C G T C T G A A C G T
A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

Vdr/MA0693.1/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GTCACGGAGTTTA
GAGTTCATTGAGTTCA
 A C G T A C G T A C G T A T C G A C G T A G T C G T C A A G T C A C T G A C T G C G T A A C T G A C G T A G C T A C G T C T G A
T C A G T C G A C A T G A C G T A C G T A G T C C T G A G A C T G A C T T C A G T C G A C T A G A C G T A C G T A G T C C T G A

PB0203.1_Zfp691_2/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GTCACGGAGTTTA---
NTNNNAGGAGTCTCNTN
 A C G T A T C G A C G T A G T C G T C A A G T C A C T G A C T G C G T A A C T G A C G T A G C T A C G T C T G A A C G T A C G T A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GTCACGGAGTTTA
----CGGAGC---
 A T C G A C G T A G T C G T C A A G T C A C T G A C T G C G T A A C T G A C G T A G C T A C G T C T G A
A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GTCACGGAGTTTA
TBGCACGCAA----
 A C G T A T C G A C G T A G T C G T C A A G T C A C T G A C T G C G T A A C T G A C G T A G C T A C G T C T G A
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T

Mitf/MA0620.1/Jaspar

Match Rank:10
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-GTCACGGAGTTTA
GGTCACGTGG----
 A C G T A T C G A C G T A G T C G T C A A G T C A C T G A C T G C G T A A C T G A C G T A G C T A C G T C T G A
C T A G T C A G A C G T T G A C G T C A A G T C T C A G G C A T A C T G T C A G A C G T A C G T A C G T A C G T