Information for 2-RGGRTCAGRTTTCAKK (Motif 2)

C T G A C T A G A C T G T C A G A C G T A G T C C T G A C T A G C T A G A C G T A C G T C G A T A G T C G C T A C A T G A C G T
Reverse Opposite:
T G C A G T A C C G A T A C T G G C T A C G T A C G T A A G T C G A T C A G C T A C T G C G T A A G T C T G A C A G T C G A C T
p-value:1e-133
log p-value:-3.069e+02
Information Content per bp:1.683
Number of Target Sequences with motif82.0
Percentage of Target Sequences with motif10.29%
Number of Background Sequences with motif45.9
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets55.0 +/- 18.8bp
Average Position of motif in Background55.0 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.92
Offset:1
Orientation:forward strand
Alignment:RGGRTCAGRTTTCAKK
-GKVTCADRTTWC---
 C T G A C T A G A C T G T C A G A C G T A G T C C T G A C T A G C T A G A C G T A C G T C G A T A G T C G C T A C A T G A C G T
A C G T C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:2
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:RGGRTCAGRTTTCAKK
-GKMTCADRTTWC---
 C T G A C T A G A C T G T C A G A C G T A G T C C T G A C T A G C T A G A C G T A C G T C G A T A G T C G C T A C A T G A C G T
A C G T C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T A C G T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:RGGRTCAGRTTTCAKK
GGGGTCAAAGTCCAAT
 C T G A C T A G A C T G T C A G A C G T A G T C C T G A C T A G C T A G A C G T A C G T C G A T A G T C G C T A C A T G A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

PB0169.1_Sox15_2/Jaspar

Match Rank:4
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:RGGRTCAGRTTTCAKK---
----TNGAATTTCATTNAN
 C T G A C T A G A C T G T C A G A C G T A G T C C T G A C T A G C T A G A C G T A C G T C G A T A G T C G C T A C A T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A T G C C T A G C T G A G T C A G A C T C A G T G C A T T G A C C T G A C A G T G A C T A G T C T G C A T G C A

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:RGGRTCAGRTTTCAKK
------TGGTTTCAGT
 C T G A C T A G A C T G T C A G A C G T A G T C C T G A C T A G C T A G A C G T A C G T C G A T A G T C G C T A C A T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T

PB0105.1_Arid3a_2/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---RGGRTCAGRTTTCAKK
ACCCGTATCAAATTT----
 A C G T A C G T A C G T C T G A C T A G A C T G T C A G A C G T A G T C C T G A C T A G C T A G A C G T A C G T C G A T A G T C G C T A C A T G A C G T
G T C A G T A C T G A C T A G C T C A G A G C T T C G A A G C T T A G C C T G A C G T A T C G A C G A T G A C T C A G T A C G T A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--RGGRTCAGRTTTCAKK
CANAGNNCAAAGTCCA--
 A C G T A C G T C T G A C T A G A C T G T C A G A C G T A G T C C T G A C T A G C T A G A C G T A C G T C G A T A G T C G C T A C A T G A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T

RXRB/MA0855.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:RGGRTCAGRTTTCAKK
GGGGTCAAAGGTCA--
 C T G A C T A G A C T G T C A G A C G T A G T C C T G A C T A G C T A G A C G T A C G T C G A T A G T C G C T A C A T G A C G T
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A A C G T A C G T

RXRG/MA0856.1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:RGGRTCAGRTTTCAKK
GGGGTCAAAGGTCA--
 C T G A C T A G A C T G T C A G A C G T A G T C C T G A C T A G C T A G A C G T A C G T C G A T A G T C G C T A C A T G A C G T
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A A C G T A C G T

Rxra/MA0512.2/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:RGGRTCAGRTTTCAKK
GGGGTCAAAGGTCA--
 C T G A C T A G A C T G T C A G A C G T A G T C C T G A C T A G C T A G A C G T A C G T C G A T A G T C G C T A C A T G A C G T
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A A C G T A C G T