Information for 15-ACCAATGAGA (Motif 13)

C G T A A G T C A G T C G T C A C G T A A G C T A C T G C T G A A C T G G C T A
Reverse Opposite:
C G A T A G T C A G C T A G T C C T G A A C G T A C G T A C T G A C T G G C A T
p-value:1e-9
log p-value:-2.179e+01
Information Content per bp:1.857
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.51%
Number of Background Sequences with motif53.8
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets48.9 +/- 25.2bp
Average Position of motif in Background53.8 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYB/MA0502.1/Jaspar

Match Rank:1
Score:0.80
Offset:-6
Orientation:forward strand
Alignment:------ACCAATGAGA
AAATGGACCAATCAG-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A G T C G T C A C G T A A G C T A C T G C T G A A C T G G C T A
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T

NFYA/MA0060.2/Jaspar

Match Rank:2
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---ACCAATGAGA-----
TGGACCAATCAGCACTCT
 A C G T A C G T A C G T C G T A A G T C A G T C G T C A C G T A A G C T A C T G C T G A A C T G G C T A A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-ACCAATGAGA
AGCCAATCGG-
 A C G T C G T A A G T C A G T C G T C A C G T A A G C T A C T G C T G A A C T G G C T A
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----ACCAATGAGA
ACTAGCCAATCA--
 A C G T A C G T A C G T A C G T C G T A A G T C A G T C G T C A C G T A A G C T A C T G C T G A A C T G G C T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

PH0107.1_Msx2/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ACCAATGAGA---
GAAGACCAATTAGCGCT
 A C G T A C G T A C G T A C G T C G T A A G T C A G T C G T C A C G T A A G C T A C T G C T G A A C T G G C T A A C G T A C G T A C G T
T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T

VENTX/MA0724.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ACCAATGAGA
ACCGATTAG-
 C G T A A G T C A G T C G T C A C G T A A G C T A C T G C T G A A C T G G C T A
C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T

PH0089.1_Isx/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---ACCAATGAGA---
ACNNCTAATTAGNNNN
 A C G T A C G T A C G T C G T A A G T C A G T C G T C A C G T A A G C T A C T G C T G A A C T G G C T A A C G T A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

MSX1/MA0666.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:ACCAATGAGA
-CCAATTAG-
 C G T A A G T C A G T C G T C A C G T A A G C T A C T G C T G A A C T G G C T A
A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T

LBX2/MA0699.1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ACCAATGAGA
GCCAATTAGC
 C G T A A G T C A G T C G T C A C G T A A G C T A C T G C T G A A C T G G C T A
T C A G A G T C G A T C T G C A T G C A A C G T A C G T C G T A C T A G T A G C

LHX9/MA0701.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:ACCAATGAGA
-CCAATTAA-
 C G T A A G T C A G T C G T C A C G T A A G C T A C T G C T G A A C T G G C T A
A C G T A G T C G A T C G T C A C G T A A C G T A C G T C T G A T C G A A C G T