Information for 10-CTTTTGGAGC (Motif 7)

A G T C A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A G T C A G T C C G T A C G T A C G T A C G T A A C T G
p-value:1e-5
log p-value:-1.349e+01
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif11.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets65.8 +/- 23.9bp
Average Position of motif in Background43.1 +/- 37.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CTTTTGGAGC
----CGGAGC
 A G T C A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C
A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTTTTGGAGC-
CCTTTTATAGNC
 A C G T A G T C A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTTTTGGAGC-
GRTGMTRGAGCC
 A C G T A G T C A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C A C G T
A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C

PB0112.1_E2F2_2/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTGGAGC------
NNNNTTGGCGCCGANNN
 A C G T A G T C A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G

PB0113.1_E2F3_2/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTGGAGC------
NNNNTTGGCGCCGANNN
 A C G T A G T C A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

E2F1/MA0024.3/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTTTTGGAGC----
--TTTGGCGCCAAA
 A G T C A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C G A T C G A T T A C G A T C G A G T C A T C G T A G C A G T C G T C A G C T A C G T A

E2F(E2F)/Hela-CellCycle-Expression/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTTTTGGAGC---
-TTTTCGCGCGAA
 A G T C A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T
A C G T G A C T A G C T A G C T A G C T A T G C A T C G A G T C A C T G A T G C A T C G T C G A T C G A

HOXC13/MA0907.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTGGAGC
NTTTTACGAGN
 A C G T A G T C A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CTTTTGGAGC--
--TTTGAAACCG
 A G T C A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.56
Offset:6
Orientation:forward strand
Alignment:CTTTTGGAGC-
------CAGCC
 A G T C A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C