Information for 4-CTCTCTGCWGCGGTCT (Motif 4)

T A G C G A C T T A G C G A C T A T G C C G A T A T C G A G T C C G A T C T A G A T G C A T C G T C A G A G C T G T A C A G C T
Reverse Opposite:
C T G A A C T G T C G A A G T C A T G C A T C G A G T C G C T A C T A G T A G C C G T A A T C G C T G A A C T G C T G A A T C G
p-value:1e-12
log p-value:-2.771e+01
Information Content per bp:1.692
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.4 +/- 23.3bp
Average Position of motif in Background60.9 +/- 8.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTCTCTGCWGCGGTCT
CCCCCTGCTGTG----
 T A G C G A C T T A G C G A C T A T G C C G A T A T C G A G T C C G A T C T A G A T G C A T C G T C A G A G C T G T A C A G C T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTCTCTGCWGCGGTCT
GGCCYCCTGCTGDGH---
 A C G T A C G T T A G C G A C T T A G C G A C T A T G C C G A T A T C G A G T C C G A T C T A G A T G C A T C G T C A G A G C T G T A C A G C T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTCTCTGCWGCGGTCT
TCNCCTGCTGNGNNN-
 T A G C G A C T T A G C G A C T A T G C C G A T A T C G A G T C C G A T C T A G A T G C A T C G T C A G A G C T G T A C A G C T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CTCTCTGCWGCGGTCT
TNTCCTGCTGTGNNG-
 T A G C G A C T T A G C G A C T A T G C C G A T A T C G A G T C C G A T C T A G A T G C A T C G T C A G A G C T G T A C A G C T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CTCTCTGCWGCGGTCT-
NNNANTGCAGTGCNNTT
 T A G C G A C T T A G C G A C T A T G C C G A T A T C G A G T C C G A T C T A G A T G C A T C G T C A G A G C T G T A C A G C T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CTCTCTGCWGCGGTCT
VBSYGTCTGG--------
 A C G T A C G T T A G C G A C T T A G C G A C T A T G C C G A T A T C G A G T C C G A T C T A G A T G C A T C G T C A G A G C T G T A C A G C T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CTCTCTGCWGCGGTCT
GACCCCCCGCTGCGC---
 A C G T A C G T T A G C G A C T T A G C G A C T A T G C C G A T A T C G A G T C C G A T C T A G A T G C A T C G T C A G A G C T G T A C A G C T
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CTCTCTGCWGCGGTCT
GACCCCCCGCTGTG----
 A C G T A C G T T A G C G A C T T A G C G A C T A T G C C G A T A T C G A G T C C G A T C T A G A T G C A T C G T C A G A G C T G T A C A G C T
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CTCTCTGCWGCGGTCT
NNTCCTGCTGTGNNN-
 T A G C G A C T T A G C G A C T A T G C C G A T A T C G A G T C C G A T C T A G A T G C A T C G T C A G A G C T G T A C A G C T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CTCTCTGCWGCGGTCT
---GCTGTG-------
 T A G C G A C T T A G C G A C T A T G C C G A T A T C G A G T C C G A T C T A G A T G C A T C G T C A G A G C T G T A C A G C T
A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T