Information for 3-RAAGGARCCTGCAGGM (Motif 3)

C T G A T G C A C G T A A C T G A T C G C T G A T C A G G T A C G T A C A C G T T C A G A T G C C G T A A C T G C T A G G T A C
Reverse Opposite:
A C T G A G T C A G T C C G A T A T C G A G T C G T C A A C T G A C T G A G T C A G C T A T G C T G A C A C G T A C G T G A C T
p-value:1e-15
log p-value:-3.482e+01
Information Content per bp:1.726
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif13.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets52.3 +/- 24.5bp
Average Position of motif in Background63.0 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:1
Score:0.55
Offset:2
Orientation:forward strand
Alignment:RAAGGARCCTGCAGGM
--AGGAAACAGCTG--
 C T G A T G C A C G T A A C T G A T C G C T G A T C A G G T A C G T A C A C G T T C A G A T G C C G T A A C T G C T A G G T A C
A C G T A C G T T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.54
Offset:7
Orientation:forward strand
Alignment:RAAGGARCCTGCAGGM-
-------CCTGCTGAGH
 C T G A T G C A C G T A A C T G A T C G C T G A T C A G G T A C G T A C A C G T T C A G A T G C C G T A A C T G C T A G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.54
Offset:2
Orientation:forward strand
Alignment:RAAGGARCCTGCAGGM-
--GGCCYCCTGCTGDGH
 C T G A T G C A C G T A A C T G A T C G C T G A T C A G G T A C G T A C A C G T T C A G A T G C C G T A A C T G C T A G G T A C A C G T
A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:RAAGGARCCTGCAGGM
----CCCCCTGCTGTG
 C T G A T G C A C G T A A C T G A T C G C T G A T C A G G T A C G T A C A C G T T C A G A T G C C G T A A C T G C T A G G T A C
A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:5
Score:0.50
Offset:2
Orientation:forward strand
Alignment:RAAGGARCCTGCAGGM-
--AAGGKGRCGCAGGCA
 C T G A T G C A C G T A A C T G A T C G C T G A T C A G G T A C G T A C A C G T T C A G A T G C C G T A A C T G C T A G G T A C A C G T
A C G T A C G T T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----RAAGGARCCTGCAGGM
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T C T G A T G C A C G T A A C T G A T C G C T G A T C A G G T A C G T A C A C G T T C A G A T G C C G T A A C T G C T A G G T A C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

GCM1/MA0646.1/Jaspar

Match Rank:7
Score:0.49
Offset:7
Orientation:forward strand
Alignment:RAAGGARCCTGCAGGM--
-------CATGCGGGTAC
 C T G A T G C A C G T A A C T G A T C G C T G A T C A G G T A C G T A C A C G T T C A G A T G C C G T A A C T G C T A G G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:RAAGGARCCTGCAGGM---
----TCNCCTGCTGNGNNN
 C T G A T G C A C G T A A C T G A T C G C T G A T C A G G T A C G T A C A C G T T C A G A T G C C G T A A C T G C T A G G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

GCM2/MA0767.1/Jaspar

Match Rank:9
Score:0.48
Offset:7
Orientation:forward strand
Alignment:RAAGGARCCTGCAGGM-
-------TATGCGGGTA
 C T G A T G C A C G T A A C T G A T C G C T G A T C A G G T A C G T A C A C G T T C A G A T G C C G T A A C T G C T A G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G A T G C C A T G A C T G C T A G G A C T C T G A

PB0024.1_Gcm1_1/Jaspar

Match Rank:10
Score:0.48
Offset:4
Orientation:reverse strand
Alignment:RAAGGARCCTGCAGGM----
----NNNNATGCGGGTNNNN
 C T G A T G C A C G T A A C T G A T C G C T G A T C A G G T A C G T A C A C G T T C A G A T G C C G T A A C T G C T A G G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A