Information for 9-TCWCTGAATRWCAAAS (Motif 9)

C G A T A T G C C G T A G T A C C G A T A C T G G T C A C G T A A C G T C T G A C G T A A G T C G T C A C T G A C T G A T A C G
Reverse Opposite:
A T G C A G C T A G C T C A G T C T A G G C A T A G C T G T C A A C G T A C G T A G T C C G T A A C T G G C A T T A C G C G T A
p-value:1e-13
log p-value:-3.158e+01
Information Content per bp:1.729
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.8 +/- 24.0bp
Average Position of motif in Background35.2 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TCWCTGAATRWCAAAS
-ATTTGCATAACAAAG
 C G A T A T G C C G T A G T A C C G A T A C T G G T C A C G T A A C G T C T G A C G T A A G T C G T C A C T G A C T G A T A C G
A C G T G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

PB0119.1_Foxa2_2/Jaspar

Match Rank:2
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TCWCTGAATRWCAAAS--
---AAAAATAACAAACGG
 C G A T A T G C C G T A G T A C C G A T A C T G G T C A C G T A A C G T C T G A C G T A A G T C G T C A C T G A C T G A T A C G A C G T A C G T
A C G T A C G T A C G T T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TCWCTGAATRWCAAAS
-ATTTGCATAACAATG
 C G A T A T G C C G T A G T A C C G A T A C T G G T C A C G T A A C G T C T G A C G T A A G T C G T C A C T G A C T G A T A C G
A C G T G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

PB0028.1_Hbp1_1/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----TCWCTGAATRWCAAAS
ACTATGAATGAATGAT----
 A C G T A C G T A C G T A C G T C G A T A T G C C G T A G T A C C G A T A C T G G T C A C G T A A C G T C T G A C G T A A G T C G T C A C T G A C T G A T A C G
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T A C G T A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TCWCTGAATRWCAAAS
NTTNTATGAATGTGNNC-
 A C G T A C G T C G A T A T G C C G T A G T A C C G A T A C T G G T C A C G T A A C G T C T G A C G T A A G T C G T C A C T G A C T G A T A C G
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C A C G T

PB0005.1_Bbx_1/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TCWCTGAATRWCAAAS
NANTTCATTGAATTA-----
 A C G T A C G T A C G T A C G T C G A T A T G C C G T A G T A C C G A T A C T G G T C A C G T A A C G T C T G A C G T A A G T C G T C A C T G A C T G A T A C G
G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A A C G T A C G T A C G T A C G T A C G T

Tcf7/MA0769.1/Jaspar

Match Rank:7
Score:0.54
Offset:5
Orientation:forward strand
Alignment:TCWCTGAATRWCAAAS-
-----AAAGATCAAAGG
 C G A T A T G C C G T A G T A C C G A T A C T G G T C A C G T A A C G T C T G A C G T A A G T C G T C A C T G A C T G A T A C G A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

LEF1/MA0768.1/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:forward strand
Alignment:TCWCTGAATRWCAAAS----
-----AAAGATCAAAGGGTT
 C G A T A T G C C G T A G T A C C G A T A C T G G T C A C G T A A C G T C T G A C G T A A G T C G T C A C T G A C T G A T A C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TCWCTGAATRWCAAAS
GAGCACAGCAGGACA---
 A C G T A C G T C G A T A T G C C G T A G T A C C G A T A C T G G T C A C G T A A C G T C T G A C G T A A G T C G T C A C T G A C T G A T A C G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:TCWCTGAATRWCAAAS
---BTGABTGACAGS-
 C G A T A T G C C G T A G T A C C G A T A C T G G T C A C G T A A C G T C T G A C G T A A G T C G T C A C T G A C T G A T A C G
A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T