Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-88 | -2.033e+02 | 0.0000 | 116.0 | 16.67% | 611.6 | 1.27% | motif file (matrix) |
svg |
2 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-43 | -9.942e+01 | 0.0000 | 118.0 | 16.95% | 1734.9 | 3.61% | motif file (matrix) |
svg |
3 |
| Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer | 1e-32 | -7.589e+01 | 0.0000 | 82.0 | 11.78% | 1077.8 | 2.24% | motif file (matrix) |
svg |
4 |
| Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer | 1e-32 | -7.454e+01 | 0.0000 | 93.0 | 13.36% | 1425.4 | 2.97% | motif file (matrix) |
svg |
5 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-21 | -5.043e+01 | 0.0000 | 166.0 | 23.85% | 5194.2 | 10.81% | motif file (matrix) |
svg |
6 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-18 | -4.328e+01 | 0.0000 | 55.0 | 7.90% | 857.7 | 1.79% | motif file (matrix) |
svg |
7 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-18 | -4.160e+01 | 0.0000 | 97.0 | 13.94% | 2454.6 | 5.11% | motif file (matrix) |
svg |
8 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-17 | -4.113e+01 | 0.0000 | 66.0 | 9.48% | 1269.3 | 2.64% | motif file (matrix) |
svg |
9 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-16 | -3.858e+01 | 0.0000 | 43.0 | 6.18% | 588.7 | 1.23% | motif file (matrix) |
svg |
10 |
| Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-16 | -3.723e+01 | 0.0000 | 57.0 | 8.19% | 1055.6 | 2.20% | motif file (matrix) |
svg |
11 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-15 | -3.502e+01 | 0.0000 | 137.0 | 19.68% | 4609.8 | 9.60% | motif file (matrix) |
svg |
12 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-15 | -3.490e+01 | 0.0000 | 144.0 | 20.69% | 4967.4 | 10.34% | motif file (matrix) |
svg |
13 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-13 | -3.076e+01 | 0.0000 | 99.0 | 14.22% | 3014.6 | 6.27% | motif file (matrix) |
svg |
14 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-13 | -3.032e+01 | 0.0000 | 16.0 | 2.30% | 76.6 | 0.16% | motif file (matrix) |
svg |
15 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-11 | -2.647e+01 | 0.0000 | 75.0 | 10.78% | 2132.3 | 4.44% | motif file (matrix) |
svg |
16 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-10 | -2.390e+01 | 0.0000 | 70.0 | 10.06% | 2029.3 | 4.22% | motif file (matrix) |
svg |
17 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-8 | -2.001e+01 | 0.0000 | 13.0 | 1.87% | 93.4 | 0.19% | motif file (matrix) |
svg |
18 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-8 | -1.975e+01 | 0.0000 | 153.0 | 21.98% | 6612.3 | 13.76% | motif file (matrix) |
svg |
19 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-7 | -1.804e+01 | 0.0000 | 68.0 | 9.77% | 2245.3 | 4.67% | motif file (matrix) |
svg |
20 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-7 | -1.764e+01 | 0.0000 | 66.0 | 9.48% | 2173.5 | 4.52% | motif file (matrix) |
svg |
21 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-7 | -1.756e+01 | 0.0000 | 102.0 | 14.66% | 4003.7 | 8.33% | motif file (matrix) |
svg |
22 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-7 | -1.680e+01 | 0.0000 | 210.0 | 30.17% | 10317.6 | 21.48% | motif file (matrix) |
svg |
23 |
| Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer | 1e-6 | -1.572e+01 | 0.0000 | 65.0 | 9.34% | 2242.3 | 4.67% | motif file (matrix) |
svg |
24 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-6 | -1.562e+01 | 0.0000 | 61.0 | 8.76% | 2054.1 | 4.28% | motif file (matrix) |
svg |
25 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-6 | -1.499e+01 | 0.0000 | 141.0 | 20.26% | 6423.8 | 13.37% | motif file (matrix) |
svg |
26 |
| CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-6 | -1.484e+01 | 0.0000 | 150.0 | 21.55% | 6964.7 | 14.50% | motif file (matrix) |
svg |
27 |
| Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer | 1e-6 | -1.449e+01 | 0.0000 | 82.0 | 11.78% | 3196.0 | 6.65% | motif file (matrix) |
svg |
28 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-5 | -1.183e+01 | 0.0001 | 42.0 | 6.03% | 1373.1 | 2.86% | motif file (matrix) |
svg |
29 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-5 | -1.155e+01 | 0.0001 | 49.0 | 7.04% | 1729.9 | 3.60% | motif file (matrix) |
svg |
30 |
| GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-4 | -1.137e+01 | 0.0001 | 82.0 | 11.78% | 3475.0 | 7.23% | motif file (matrix) |
svg |
31 |
| HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer | 1e-4 | -1.087e+01 | 0.0002 | 64.0 | 9.20% | 2549.1 | 5.31% | motif file (matrix) |
svg |
32 |
| Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer | 1e-4 | -1.083e+01 | 0.0002 | 266.0 | 38.22% | 14807.4 | 30.82% | motif file (matrix) |
svg |
33 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-4 | -1.040e+01 | 0.0003 | 97.0 | 13.94% | 4418.3 | 9.20% | motif file (matrix) |
svg |
34 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-4 | -1.031e+01 | 0.0004 | 245.0 | 35.20% | 13541.5 | 28.19% | motif file (matrix) |
svg |
35 |
| Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer | 1e-4 | -9.587e+00 | 0.0007 | 22.0 | 3.16% | 586.1 | 1.22% | motif file (matrix) |
svg |
36 |
| Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer | 1e-3 | -8.675e+00 | 0.0017 | 10.0 | 1.44% | 163.8 | 0.34% | motif file (matrix) |
svg |
37 |
| OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer | 1e-3 | -8.471e+00 | 0.0021 | 11.0 | 1.58% | 200.1 | 0.42% | motif file (matrix) |
svg |
38 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-3 | -8.419e+00 | 0.0021 | 68.0 | 9.77% | 3003.7 | 6.25% | motif file (matrix) |
svg |
39 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-3 | -7.832e+00 | 0.0037 | 80.0 | 11.49% | 3754.5 | 7.81% | motif file (matrix) |
svg |
40 |
| Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer | 1e-3 | -7.461e+00 | 0.0052 | 24.0 | 3.45% | 778.8 | 1.62% | motif file (matrix) |
svg |
41 |
| CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.049e+00 | 0.0077 | 52.0 | 7.47% | 2261.7 | 4.71% | motif file (matrix) |
svg |
42 |
| Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer | 1e-3 | -6.936e+00 | 0.0084 | 25.0 | 3.59% | 857.1 | 1.78% | motif file (matrix) |
svg |
43 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-2 | -6.737e+00 | 0.0100 | 65.0 | 9.34% | 3029.3 | 6.31% | motif file (matrix) |
svg |
44 |
| E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -6.609e+00 | 0.0112 | 50.0 | 7.18% | 2197.1 | 4.57% | motif file (matrix) |
svg |
45 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-2 | -6.578e+00 | 0.0112 | 65.0 | 9.34% | 3049.4 | 6.35% | motif file (matrix) |
svg |
46 |
| Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-2 | -6.477e+00 | 0.0122 | 116.0 | 16.67% | 6113.8 | 12.73% | motif file (matrix) |
svg |
47 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-2 | -6.400e+00 | 0.0129 | 25.0 | 3.59% | 892.9 | 1.86% | motif file (matrix) |
svg |
48 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-2 | -6.334e+00 | 0.0135 | 50.0 | 7.18% | 2227.8 | 4.64% | motif file (matrix) |
svg |
49 |
| EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-2 | -6.307e+00 | 0.0135 | 38.0 | 5.46% | 1572.7 | 3.27% | motif file (matrix) |
svg |
50 |
| ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer | 1e-2 | -6.119e+00 | 0.0160 | 64.0 | 9.20% | 3052.0 | 6.35% | motif file (matrix) |
svg |
51 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-2 | -6.100e+00 | 0.0160 | 29.0 | 4.17% | 1116.1 | 2.32% | motif file (matrix) |
svg |
52 |
| Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer | 1e-2 | -5.879e+00 | 0.0196 | 21.0 | 3.02% | 730.9 | 1.52% | motif file (matrix) |
svg |
53 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-2 | -5.854e+00 | 0.0197 | 48.0 | 6.90% | 2169.4 | 4.52% | motif file (matrix) |
svg |
54 |
| Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer | 1e-2 | -5.519e+00 | 0.0270 | 12.0 | 1.72% | 333.4 | 0.69% | motif file (matrix) |
svg |
55 |
| ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.342e+00 | 0.0317 | 31.0 | 4.45% | 1287.0 | 2.68% | motif file (matrix) |
svg |
56 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-2 | -5.319e+00 | 0.0318 | 55.0 | 7.90% | 2636.7 | 5.49% | motif file (matrix) |
svg |
57 |
| ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer | 1e-2 | -5.300e+00 | 0.0319 | 8.0 | 1.15% | 178.4 | 0.37% | motif file (matrix) |
svg |
58 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-2 | -5.158e+00 | 0.0361 | 184.0 | 26.44% | 10718.8 | 22.31% | motif file (matrix) |
svg |
59 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-2 | -5.150e+00 | 0.0361 | 50.0 | 7.18% | 2369.3 | 4.93% | motif file (matrix) |
svg |
60 |
| Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.097e+00 | 0.0371 | 33.0 | 4.74% | 1418.2 | 2.95% | motif file (matrix) |
svg |
61 |
| AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer | 1e-2 | -5.025e+00 | 0.0392 | 73.0 | 10.49% | 3746.5 | 7.80% | motif file (matrix) |
svg |
62 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-2 | -4.909e+00 | 0.0433 | 49.0 | 7.04% | 2343.7 | 4.88% | motif file (matrix) |
svg |
63 |
| E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-2 | -4.888e+00 | 0.0436 | 48.0 | 6.90% | 2288.4 | 4.76% | motif file (matrix) |
svg |
64 |
| PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer | 1e-2 | -4.878e+00 | 0.0436 | 15.0 | 2.16% | 502.6 | 1.05% | motif file (matrix) |
svg |
65 |
| Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-2 | -4.736e+00 | 0.0492 | 68.0 | 9.77% | 3493.4 | 7.27% | motif file (matrix) |
svg |
66 |
| ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-2 | -4.641e+00 | 0.0532 | 72.0 | 10.34% | 3751.8 | 7.81% | motif file (matrix) |
svg |
67 |
| MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-2 | -4.637e+00 | 0.0532 | 33.0 | 4.74% | 1466.7 | 3.05% | motif file (matrix) |
svg |