Information for 3-CAGACAKRGGAKG (Motif 9)

A G T C C G T A A C T G C G T A A G T C C G T A A C G T C T G A A C T G A C T G C G T A A C G T A C T G
Reverse Opposite:
A G T C G T A C A C G T A G T C A G T C A G C T G T C A A C G T A C T G A C G T A G T C A C G T A C T G
p-value:1e-9
log p-value:-2.172e+01
Information Content per bp:1.910
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.0 +/- 21.5bp
Average Position of motif in Background64.7 +/- 7.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------CAGACAKRGGAKG
CAAATCCAGACATCACA--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A A C G T C T G A A C T G A C T G C G T A A C G T A C T G
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CAGACAKRGGAKG
CCAGACAG------
 A C G T A G T C C G T A A C T G C G T A A G T C C G T A A C G T C T G A A C T G A C T G C G T A A C G T A C T G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CAGACAKRGGAKG
CCAGACRSVB----
 A C G T A G T C C G T A A C T G C G T A A G T C C G T A A C G T C T G A A C T G A C T G C G T A A C G T A C T G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CAGACAKRGGAKG
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A A C G T C T G A A C T G A C T G C G T A A C G T A C T G
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CAGACAKRGGAKG
BCAGACWA------
 A C G T A G T C C G T A A C T G C G T A A G T C C G T A A C G T C T G A A C T G A C T G C G T A A C G T A C T G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CAGACAKRGGAKG-
SMCAGTCWGAKGGAGGAGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A A C G T C T G A A C T G A C T G C G T A A C G T A C T G A C G T
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CAGACAKRGGAKG
--AACAAAGG---
 A G T C C G T A A C T G C G T A A G T C C G T A A C G T C T G A A C T G A C T G C G T A A C G T A C T G
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CAGACAKRGGAKG
AAAACAAAGG---
 A G T C C G T A A C T G C G T A A G T C C G T A A C G T C T G A A C T G A C T G C G T A A C G T A C T G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

PB0098.1_Zfp410_1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAGACAKRGGAKG-----
-TATTATGGGATGGATAA
 A G T C C G T A A C T G C G T A A G T C C G T A A C G T C T G A A C T G A C T G C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C G A T T C G A C A G T C G A T G T C A C G A T C A T G C A T G C A T G C T G A C A G T C T A G A C T G T G C A C A G T C G T A T G C A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CAGACAKRGGAKG
AGGTGHCAGACA-------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A A C G T C T G A A C T G A C T G C G T A A C G T A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T