Information for 2-CTRTGTGGTCCACWGG (Motif 4)

A G T C A C G T C T G A C G A T A C T G A G C T A C T G C T A G A G C T A G T C A G T C G T C A G T A C C G T A A C T G A C T G
Reverse Opposite:
A G T C G T A C C G A T A C T G A C G T A C T G C T A G C T G A A G T C G T A C C T G A A G T C C G T A A G C T C G T A A C T G
p-value:1e-10
log p-value:-2.517e+01
Information Content per bp:1.802
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.3 +/- 21.8bp
Average Position of motif in Background65.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTRTGTGGTCCACWGG
CGTGGGTGGTCC-----
 A C G T A G T C A C G T C T G A C G A T A C T G A G C T A C T G C T A G A G C T A G T C A G T C G T C A G T A C C G T A A C T G A C T G
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C A C G T A C G T A C G T A C G T A C G T

GLI2/MA0734.1/Jaspar

Match Rank:2
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTRTGTGGTCCACWGG
CAGTGTGGTCGC----
 A G T C A C G T C T G A C G A T A C T G A G C T A C T G C T A G A G C T A G T C A G T C G T C A G T A C C G T A A C T G A C T G
G A T C G C T A C A T G A C G T A T C G C A G T T A C G C T A G A C G T G T A C A C T G G A T C A C G T A C G T A C G T A C G T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:CTRTGTGGTCCACWGG----
--------TCCCCTGGGGAC
 A G T C A C G T C T G A C G A T A C T G A G C T A C T G C T A G A G C T A G T C A G T C G T C A G T A C C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C

ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CTRTGTGGTCCACWGG
---TGGGGCCCAC---
 A G T C A C G T C T G A C G A T A C T G A G C T A C T G C T A G A G C T A G T C A G T C G T C A G T A C C G T A A C T G A C T G
A C G T A C G T A C G T G A C T C T A G A C T G A C T G T A C G A G T C A G T C A G T C C T G A A T G C A C G T A C G T A C G T

PLAG1/MA0163.1/Jaspar

Match Rank:5
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CTRTGTGGTCCACWGG--
----GGGGCCCAAGGGGG
 A G T C A C G T C T G A C G A T A C T G A G C T A C T G C T A G A G C T A G T C A G T C G T C A G T A C C G T A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:6
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:CTRTGTGGTCCACWGG---
-----NTGCCCANNGGTNA
 A G T C A C G T C T G A C G A T A C T G A G C T A C T G C T A G A G C T A G T C A G T C G T C A G T A C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CTRTGTGGTCCACWGG
NNHTGTGGTTWN----
 A G T C A C G T C T G A C G A T A C T G A G C T A C T G C T A G A G C T A G T C A G T C G T C A G T A C C G T A A C T G A C T G
C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CTRTGTGGTCCACWGG
TTAAGTGGT-------
 A G T C A C G T C T G A C G A T A C T G A G C T A C T G C T A G A G C T A G T C A G T C G T C A G T A C C G T A A C T G A C T G
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:9
Score:0.50
Offset:6
Orientation:forward strand
Alignment:CTRTGTGGTCCACWGG--
------NGTCCCNNGGGA
 A G T C A C G T C T G A C G A T A C T G A G C T A C T G C T A G A G C T A G T C A G T C G T C A G T A C C G T A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G A T C G G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A

NFYA/MA0060.2/Jaspar

Match Rank:10
Score:0.50
Offset:-6
Orientation:forward strand
Alignment:------CTRTGTGGTCCACWGG
AGAGTGCTGATTGGTCCA----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T C T G A C G A T A C T G A G C T A C T G C T A G A G C T A G T C A G T C G T C A G T A C C G T A A C T G A C T G
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A A C G T A C G T A C G T A C G T