Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-76 | -1.772e+02 | 0.0000 | 87.0 | 10.62% | 273.9 | 0.59% | motif file (matrix) |
svg |
2 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-68 | -1.587e+02 | 0.0000 | 261.0 | 31.87% | 4471.0 | 9.59% | motif file (matrix) |
svg |
3 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-64 | -1.474e+02 | 0.0000 | 273.0 | 33.33% | 5144.2 | 11.04% | motif file (matrix) |
svg |
4 |
| Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-60 | -1.395e+02 | 0.0000 | 162.0 | 19.78% | 1930.0 | 4.14% | motif file (matrix) |
svg |
5 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-58 | -1.356e+02 | 0.0000 | 99.0 | 12.09% | 640.7 | 1.37% | motif file (matrix) |
svg |
6 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-57 | -1.313e+02 | 0.0000 | 176.0 | 21.49% | 2430.8 | 5.22% | motif file (matrix) |
svg |
7 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-50 | -1.167e+02 | 0.0000 | 191.0 | 23.32% | 3153.4 | 6.77% | motif file (matrix) |
svg |
8 |
| c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-45 | -1.047e+02 | 0.0000 | 132.0 | 16.12% | 1689.5 | 3.63% | motif file (matrix) |
svg |
9 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-36 | -8.498e+01 | 0.0000 | 108.0 | 13.19% | 1382.7 | 2.97% | motif file (matrix) |
svg |
10 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-28 | -6.564e+01 | 0.0000 | 105.0 | 12.82% | 1653.5 | 3.55% | motif file (matrix) |
svg |
11 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-28 | -6.494e+01 | 0.0000 | 109.0 | 13.31% | 1786.9 | 3.83% | motif file (matrix) |
svg |
12 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-24 | -5.660e+01 | 0.0000 | 76.0 | 9.28% | 1021.2 | 2.19% | motif file (matrix) |
svg |
13 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-15 | -3.521e+01 | 0.0000 | 52.0 | 6.35% | 767.1 | 1.65% | motif file (matrix) |
svg |
14 |
| MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-14 | -3.360e+01 | 0.0000 | 94.0 | 11.48% | 2172.1 | 4.66% | motif file (matrix) |
svg |
15 |
| REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-9 | -2.301e+01 | 0.0000 | 9.0 | 1.10% | 19.3 | 0.04% | motif file (matrix) |
svg |
16 |
| HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-9 | -2.125e+01 | 0.0000 | 111.0 | 13.55% | 3433.1 | 7.37% | motif file (matrix) |
svg |
17 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-9 | -2.079e+01 | 0.0000 | 247.0 | 30.16% | 9857.6 | 21.15% | motif file (matrix) |
svg |
18 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-7 | -1.770e+01 | 0.0000 | 197.0 | 24.05% | 7694.9 | 16.51% | motif file (matrix) |
svg |
19 |
| Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer | 1e-6 | -1.388e+01 | 0.0000 | 73.0 | 8.91% | 2279.8 | 4.89% | motif file (matrix) |
svg |
20 |
| E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-5 | -1.351e+01 | 0.0000 | 143.0 | 17.46% | 5501.8 | 11.81% | motif file (matrix) |
svg |
21 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-5 | -1.320e+01 | 0.0000 | 213.0 | 26.01% | 9006.1 | 19.32% | motif file (matrix) |
svg |
22 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-5 | -1.287e+01 | 0.0000 | 58.0 | 7.08% | 1715.0 | 3.68% | motif file (matrix) |
svg |
23 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-5 | -1.267e+01 | 0.0000 | 46.0 | 5.62% | 1244.0 | 2.67% | motif file (matrix) |
svg |
24 |
| Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-5 | -1.185e+01 | 0.0001 | 122.0 | 14.90% | 4666.2 | 10.01% | motif file (matrix) |
svg |
25 |
| Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer | 1e-5 | -1.182e+01 | 0.0001 | 25.0 | 3.05% | 512.6 | 1.10% | motif file (matrix) |
svg |
26 |
| Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer | 1e-5 | -1.165e+01 | 0.0001 | 20.0 | 2.44% | 357.0 | 0.77% | motif file (matrix) |
svg |
27 |
| Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-4 | -1.151e+01 | 0.0001 | 97.0 | 11.84% | 3525.6 | 7.56% | motif file (matrix) |
svg |
28 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-4 | -1.039e+01 | 0.0004 | 76.0 | 9.28% | 2663.9 | 5.72% | motif file (matrix) |
svg |
29 |
| E-box(bHLH)/Promoter/Homer | 1e-4 | -1.034e+01 | 0.0004 | 15.0 | 1.83% | 239.2 | 0.51% | motif file (matrix) |
svg |
30 |
| MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-4 | -1.034e+01 | 0.0004 | 59.0 | 7.20% | 1916.3 | 4.11% | motif file (matrix) |
svg |
31 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-4 | -9.647e+00 | 0.0008 | 76.0 | 9.28% | 2726.7 | 5.85% | motif file (matrix) |
svg |
32 |
| Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-4 | -9.467e+00 | 0.0009 | 143.0 | 17.46% | 5962.2 | 12.79% | motif file (matrix) |
svg |
33 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-4 | -9.465e+00 | 0.0009 | 67.0 | 8.18% | 2335.0 | 5.01% | motif file (matrix) |
svg |
34 |
| Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer | 1e-3 | -8.760e+00 | 0.0017 | 100.0 | 12.21% | 3940.6 | 8.46% | motif file (matrix) |
svg |
35 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-3 | -8.622e+00 | 0.0019 | 22.0 | 2.69% | 517.1 | 1.11% | motif file (matrix) |
svg |
36 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-3 | -8.328e+00 | 0.0024 | 35.0 | 4.27% | 1033.4 | 2.22% | motif file (matrix) |
svg |
37 |
| E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer | 1e-3 | -8.323e+00 | 0.0024 | 53.0 | 6.47% | 1801.9 | 3.87% | motif file (matrix) |
svg |
38 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-3 | -8.143e+00 | 0.0028 | 44.0 | 5.37% | 1422.6 | 3.05% | motif file (matrix) |
svg |
39 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-3 | -8.051e+00 | 0.0030 | 34.0 | 4.15% | 1009.0 | 2.17% | motif file (matrix) |
svg |
40 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-3 | -7.882e+00 | 0.0034 | 28.0 | 3.42% | 776.9 | 1.67% | motif file (matrix) |
svg |
41 |
| TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-3 | -7.673e+00 | 0.0041 | 7.0 | 0.85% | 76.3 | 0.16% | motif file (matrix) |
svg |
42 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-3 | -7.532e+00 | 0.0046 | 32.0 | 3.91% | 956.4 | 2.05% | motif file (matrix) |
svg |
43 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-3 | -7.526e+00 | 0.0046 | 21.0 | 2.56% | 524.2 | 1.12% | motif file (matrix) |
svg |
44 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-3 | -7.324e+00 | 0.0055 | 61.0 | 7.45% | 2247.2 | 4.82% | motif file (matrix) |
svg |
45 |
| Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer | 1e-3 | -7.313e+00 | 0.0055 | 143.0 | 17.46% | 6265.1 | 13.44% | motif file (matrix) |
svg |
46 |
| RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-3 | -7.088e+00 | 0.0066 | 28.0 | 3.42% | 818.6 | 1.76% | motif file (matrix) |
svg |
47 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-3 | -7.060e+00 | 0.0067 | 26.0 | 3.17% | 739.3 | 1.59% | motif file (matrix) |
svg |
48 |
| HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer | 1e-3 | -7.054e+00 | 0.0067 | 31.0 | 3.79% | 943.5 | 2.02% | motif file (matrix) |
svg |
49 |
| E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-3 | -7.042e+00 | 0.0067 | 138.0 | 16.85% | 6052.3 | 12.99% | motif file (matrix) |
svg |
50 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.891e+00 | 0.0074 | 16.0 | 1.95% | 367.4 | 0.79% | motif file (matrix) |
svg |
51 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-2 | -6.706e+00 | 0.0087 | 29.0 | 3.54% | 881.6 | 1.89% | motif file (matrix) |
svg |
52 |
| TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer | 1e-2 | -6.697e+00 | 0.0087 | 10.0 | 1.22% | 174.4 | 0.37% | motif file (matrix) |
svg |
53 |
| Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer | 1e-2 | -6.639e+00 | 0.0090 | 48.0 | 5.86% | 1714.4 | 3.68% | motif file (matrix) |
svg |
54 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-2 | -6.584e+00 | 0.0093 | 165.0 | 20.15% | 7519.4 | 16.13% | motif file (matrix) |
svg |
55 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-2 | -6.529e+00 | 0.0097 | 24.0 | 2.93% | 687.8 | 1.48% | motif file (matrix) |
svg |
56 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -6.517e+00 | 0.0097 | 77.0 | 9.40% | 3088.3 | 6.63% | motif file (matrix) |
svg |
57 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-2 | -6.498e+00 | 0.0097 | 28.0 | 3.42% | 852.7 | 1.83% | motif file (matrix) |
svg |
58 |
| ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer | 1e-2 | -6.485e+00 | 0.0097 | 135.0 | 16.48% | 5987.7 | 12.85% | motif file (matrix) |
svg |
59 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-2 | -6.206e+00 | 0.0125 | 55.0 | 6.72% | 2076.8 | 4.46% | motif file (matrix) |
svg |
60 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-2 | -6.112e+00 | 0.0134 | 65.0 | 7.94% | 2558.3 | 5.49% | motif file (matrix) |
svg |
61 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-2 | -6.105e+00 | 0.0134 | 30.0 | 3.66% | 961.2 | 2.06% | motif file (matrix) |
svg |
62 |
| Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer | 1e-2 | -6.103e+00 | 0.0134 | 57.0 | 6.96% | 2180.1 | 4.68% | motif file (matrix) |
svg |
63 |
| ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.917e+00 | 0.0156 | 67.0 | 8.18% | 2676.4 | 5.74% | motif file (matrix) |
svg |
64 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-2 | -5.865e+00 | 0.0161 | 37.0 | 4.52% | 1285.0 | 2.76% | motif file (matrix) |
svg |
65 |
| OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-2 | -5.795e+00 | 0.0170 | 6.0 | 0.73% | 79.0 | 0.17% | motif file (matrix) |
svg |
66 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-2 | -5.724e+00 | 0.0180 | 70.0 | 8.55% | 2844.2 | 6.10% | motif file (matrix) |
svg |
67 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-2 | -5.390e+00 | 0.0248 | 68.0 | 8.30% | 2788.8 | 5.98% | motif file (matrix) |
svg |
68 |
| Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-2 | -5.121e+00 | 0.0320 | 12.0 | 1.47% | 289.3 | 0.62% | motif file (matrix) |
svg |
69 |
| p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer | 1e-2 | -5.051e+00 | 0.0338 | 24.0 | 2.93% | 775.1 | 1.66% | motif file (matrix) |
svg |
70 |
| OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer | 1e-2 | -4.980e+00 | 0.0357 | 4.0 | 0.49% | 42.2 | 0.09% | motif file (matrix) |
svg |
71 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -4.801e+00 | 0.0422 | 31.0 | 3.79% | 1102.8 | 2.37% | motif file (matrix) |
svg |
72 |
| CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-2 | -4.697e+00 | 0.0461 | 3.0 | 0.37% | 24.8 | 0.05% | motif file (matrix) |
svg |
73 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-2 | -4.684e+00 | 0.0461 | 82.0 | 10.01% | 3581.9 | 7.69% | motif file (matrix) |
svg |
74 |
| EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer | 1e-2 | -4.615e+00 | 0.0487 | 33.0 | 4.03% | 1209.9 | 2.60% | motif file (matrix) |
svg |