Information for 6-KSGKGTCTGKCASMTG (Motif 17)

A C T G A T G C A T C G A C G T A C T G A C G T A G T C A G C T A C T G A C T G A G T C C G T A A T C G G T A C A C G T A C T G
Reverse Opposite:
A G T C C G T A A C T G A T G C A C G T A C T G G T A C A G T C C T G A A C T G T G C A A G T C G T C A A T G C A T C G G T A C
p-value:1e-7
log p-value:-1.813e+01
Information Content per bp:1.844
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.0 +/- 10.4bp
Average Position of motif in Background73.7 +/- 4.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:KSGKGTCTGKCASMTG
---TGTCTGDCACCT-
 A C T G A T G C A T C G A C G T A C T G A C G T A G T C A G C T A C T G A C T G A G T C C G T A A T C G G T A C A C G T A C T G
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.77
Offset:2
Orientation:forward strand
Alignment:KSGKGTCTGKCASMTG
--CTGTCTGTCACCT-
 A C T G A T G C A T C G A C G T A C T G A C G T A G T C A G C T A C T G A C T G A G T C C G T A A T C G G T A C A C G T A C T G
A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:forward strand
Alignment:KSGKGTCTGKCASMTG
---GGTCTGGCAT---
 A C T G A T G C A T C G A C G T A C T G A C G T A G T C A G C T A C T G A C T G A G T C C G T A A T C G G T A C A C G T A C T G
A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:KSGKGTCTGKCASMTG
VBSYGTCTGG------
 A C T G A T G C A T C G A C G T A C T G A C G T A G T C A G C T A C T G A C T G A G T C C G T A A T C G G T A C A C G T A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.61
Offset:7
Orientation:forward strand
Alignment:KSGKGTCTGKCASMTG
-------TGTCANYT-
 A C T G A T G C A T C G A C G T A C T G A C G T A G T C A G C T A C T G A C T G A G T C C G T A A T C G G T A C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.61
Offset:4
Orientation:forward strand
Alignment:KSGKGTCTGKCASMTG
----VGCTGWCAVB--
 A C T G A T G C A T C G A C G T A C T G A C G T A G T C A G C T A C T G A C T G A G T C C G T A A T C G G T A C A C G T A C T G
A C G T A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.61
Offset:2
Orientation:forward strand
Alignment:KSGKGTCTGKCASMTG
--CTGTCTGG------
 A C T G A T G C A T C G A C G T A C T G A C G T A G T C A G C T A C T G A C T G A G T C C G T A A T C G G T A C A C G T A C T G
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--KSGKGTCTGKCASMTG
NNTNNTGTCTGGNNTNG-
 A C G T A C G T A C T G A T G C A T C G A C G T A C T G A C G T A G T C A G C T A C T G A C T G A G T C C G T A A T C G G T A C A C G T A C T G
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:9
Score:0.59
Offset:8
Orientation:reverse strand
Alignment:KSGKGTCTGKCASMTG----
--------NVCAGCTGBBNN
 A C T G A T G C A T C G A C G T A C T G A C G T A G T C A G C T A C T G A C T G A G T C C G T A A T C G G T A C A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C

PB0151.1_Myf6_2/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-KSGKGTCTGKCASMTG
GGNGCGNCTGTTNNN--
 A C G T A C T G A T G C A T C G A C G T A C T G A C G T A G T C A G C T A C T G A C T G A G T C C G T A A T C G G T A C A C G T A C T G
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T A C G T A C G T