Information for 11-GCACATACAC (Motif 12)

A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G A C G T C G T A A C G T A C T G A C G T A C T G A G T C
p-value:1e-8
log p-value:-1.848e+01
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif8.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets44.6 +/- 22.4bp
Average Position of motif in Background48.1 +/- 33.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GCACATACAC--
AGCGGCACACACGCAA
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C C G T A A G T C A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0104.1_Zscan4_1/Jaspar

Match Rank:2
Score:0.68
Offset:-7
Orientation:forward strand
Alignment:-------GCACATACAC
TACATGTGCACATAAAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C C G T A A G T C
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

PB0026.1_Gm397_1/Jaspar

Match Rank:3
Score:0.67
Offset:-7
Orientation:forward strand
Alignment:-------GCACATACAC
CAGATGTGCACATACGT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C C G T A A G T C
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCACATACAC--
CGAAGCACACAAAATA
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C C G T A A G T C A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCACATACAC
GCACGTACCC
 A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C C G T A A G T C
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCACATACAC
GCACGTAY--
 A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C C G T A A G T C
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCACATACAC-----
GACCACATTCATACAAT
 A C G T A C G T A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCACATACAC
BGCACGTA---
 A C G T A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C C G T A A G T C
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T

NRF(NRF)/Promoter/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCACATACAC--
GCGCATGCGCAC
 A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C C G T A A G T C A C G T A C G T
A C T G A G T C A C T G A G T C C G T A A C G T A C T G A G T C A C T G A G T C C T G A T A G C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCACATACAC
GCACGTNC--
 A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C C G T A A G T C
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T