Information for 4-GGCACAGRAGTTGCTT (Motif 6)

A C T G A C T G A T G C T C G A A G T C C G T A T A C G T C G A C T G A A T C G C A G T A C G T A C T G A G T C A C G T A C G T
Reverse Opposite:
T C G A C G T A A C T G A G T C G T C A G T C A A T G C A G C T A G C T A G T C C G A T T C A G A C G T A T C G G T A C T A G C
p-value:1e-13
log p-value:-3.040e+01
Information Content per bp:1.704
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.48%
Number of Background Sequences with motif21.4
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets42.1 +/- 15.9bp
Average Position of motif in Background52.5 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.58
Offset:11
Orientation:reverse strand
Alignment:GGCACAGRAGTTGCTT
-----------NGCTN
 A C T G A C T G A T G C T C G A A G T C C G T A T A C G T C G A C T G A A T C G C A G T A C G T A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGCACAGRAGTTGCTT--
NNNGGGHAGCAHRTGCTRCC
 A C G T A C G T A C T G A C T G A T G C T C G A A G T C C G T A T A C G T C G A C T G A A T C G C A G T A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A T G C A G T C G C A T C T A G A C T G C T A G G A C T C G T A C T A G A G T C T G C A G C A T C T G A A C G T T C A G A G T C A C G T C T A G A G T C A G T C

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GGCACAGRAGTTGCTT
-GVACAGNMTGTYCTB
 A C T G A C T G A T G C T C G A A G T C C G T A T A C G T C G A C T G A A T C G C A G T A C G T A C T G A G T C A C G T A C G T
A C G T C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GGCACAGRAGTTGCTT
-GRACAGWMTGTYCTB
 A C T G A C T G A T G C T C G A A G T C C G T A T A C G T C G A C T G A A T C G C A G T A C G T A C T G A G T C A C G T A C G T
A C G T C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:5
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GGCACAGRAGTTGCTT----
-----AGATGCTRCTRCCHT
 A C T G A C T G A T G C T C G A A G T C C G T A T A C G T C G A C T G A A T C G C A G T A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GGCACAGRAGTTGCTT
AGNACANNNTGTNCTN
 A C T G A C T G A T G C T C G A A G T C C G T A T A C G T C G A C T G A A T C G C A G T A C G T A C T G A G T C A C G T A C G T
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GGCACAGRAGTTGCTT
AGNACAGNCTGTTCTN
 A C T G A C T G A T G C T C G A A G T C C G T A T A C G T C G A C T G A A T C G C A G T A C G T A C T G A G T C A C G T A C G T
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GGCACAGRAGTTGCTT
CCAGGAACAG---------
 A C G T A C G T A C G T A C T G A C T G A T G C T C G A A G T C C G T A T A C G T C G A C T G A A T C G C A G T A C G T A C T G A G T C A C G T A C G T
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:9
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GGCACAGRAGTTGCTT
-----AGCAGCTGCT-
 A C T G A C T G A T G C T C G A A G T C C G T A T A C G T C G A C T G A A T C G C A G T A C G T A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T A C G T

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.51
Offset:5
Orientation:forward strand
Alignment:GGCACAGRAGTTGCTT----
-----AGAAATGACTTCCCT
 A C T G A C T G A T G C T C G A A G T C C G T A T A C G T C G A C T G A A T C G C A G T A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T A G T G C A C T G A T C G A A G C T C A T G T C G A A G T C G A C T A C G T A G T C G A T C G A T C G A C T