Information for 8-CATTTAGCAAAGGGGC (Motif 13)

A G T C C G T A C G A T C G A T A G C T C G T A C T A G T A G C C G T A C T G A C G T A C T A G C T A G C T A G A C T G G T A C
Reverse Opposite:
A C T G G T A C A G T C G A T C A G T C C G A T A G C T A C G T A C T G A G T C C G A T C T G A C G T A C G T A C G A T A C T G
p-value:1e-10
log p-value:-2.473e+01
Information Content per bp:1.686
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif18.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets46.9 +/- 18.9bp
Average Position of motif in Background52.2 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CATTTAGCAAAGGGGC
CCGCATAGCAACGGA--
 A C G T A G T C C G T A C G A T C G A T A G C T C G T A C T A G T A G C C G T A C T G A C G T A C T A G C T A G C T A G A C T G G T A C
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CATTTAGCAAAGGGGC
AAAAATAACAAACGG--
 A C G T A G T C C G T A C G A T C G A T A G C T C G T A C T A G T A G C C G T A C T G A C G T A C T A G C T A G C T A G A C T G G T A C
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CATTTAGCAAAGGGGC
-----AACAAAGG---
 A G T C C G T A C G A T C G A T A G C T C G T A C T A G T A G C C G T A C T G A C G T A C T A G C T A G C T A G A C T G G T A C
A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CATTTAGCAAAGGGGC
-----RACAAWGG---
 A G T C C G T A C G A T C G A T A G C T C G T A C T A G T A G C C G T A C T G A C G T A C T A G C T A G C T A G A C T G G T A C
A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CATTTAGCAAAGGGGC-
AGAAGAACAAAGGACTA
 A G T C C G T A C G A T C G A T A G C T C G T A C T A G T A G C C G T A C T G A C G T A C T A G C T A G C T A G A C T G G T A C A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0040.1_Lef1_1/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CATTTAGCAAAGGGGC-
NANAGATCAAAGGGNNN
 A G T C C G T A C G A T C G A T A G C T C G T A C T A G T A G C C G T A C T G A C G T A C T A G C T A G C T A G A C T G G T A C A C G T
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

PB0061.1_Sox11_1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CATTTAGCAAAGGGGC-
ATAAGAACAAAGGACTA
 A G T C C G T A C G A T C G A T A G C T C G T A C T A G T A G C C G T A C T G A C G T A C T A G C T A G C T A G A C T G G T A C A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CATTTAGCAAAGGGGC-
NNNAGATCAAAGGANNN
 A G T C C G T A C G A T C G A T A G C T C G T A C T A G T A G C C G T A C T G A C G T A C T A G C T A G C T A G A C T G G T A C A C G T
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

PB0128.1_Gcm1_2/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CATTTAGCAAAGGGGC----
---TGCGCATAGGGGAGGAG
 A G T C C G T A C G A T C G A T A G C T C G T A C T A G T A G C C G T A C T G A C G T A C T A G C T A G C T A G A C T G G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C A T G A T G C T A C G G T A C T C G A A G C T T C G A C A T G A C T G A C T G A C T G T C G A A T C G T C A G G T C A A C T G

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CATTTAGCAAAGGGGC
---ACATCAAAGG---
 A G T C C G T A C G A T C G A T A G C T C G T A C T A G T A G C C G T A C T G A C G T A C T A G C T A G C T A G A C T G G T A C
A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T