Information for 3-CAATTTGAGC (Motif 5)

A G T C G T C A C G T A A C G T C G A T A C G T A T C G C G T A C T A G A G T C
Reverse Opposite:
A C T G A G T C A C G T A T G C G T C A C G T A C G T A A C G T A C G T A C T G
p-value:1e-10
log p-value:-2.362e+01
Information Content per bp:1.878
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.71%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets46.3 +/- 33.7bp
Average Position of motif in Background67.9 +/- 16.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA5/MA0158.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CAATTTGAGC
-AATTAGTG-
 A G T C G T C A C G T A A C G T C G A T A C G T A T C G C G T A C T A G A G T C
A C G T T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T

PB0175.1_Sox4_2/Jaspar

Match Rank:2
Score:0.64
Offset:-7
Orientation:reverse strand
Alignment:-------CAATTTGAGC
TNCNNAACAATTTTTNC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T C A C G T A A C G T C G A T A C G T A T C G C G T A C T A G A G T C
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAATTTGAGC
AAATCACTGC
 A G T C G T C A C G T A A C G T C G A T A C G T A T C G C G T A C T A G A G T C
T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C

PB0165.1_Sox11_2/Jaspar

Match Rank:4
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------CAATTTGAGC
NNCNNAACAATTNT---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T C A C G T A A C G T C G A T A C G T A T C G C G T A C T A G A G T C
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T A C G T A C G T A C G T

PB0177.1_Sox7_2/Jaspar

Match Rank:5
Score:0.61
Offset:-12
Orientation:reverse strand
Alignment:------------CAATTTGAGC
NNCNNNCNCANACAATTAGNAC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T C A C G T A A C G T C G A T A C G T A T C G C G T A C T A G A G T C
T C G A A T C G T G A C C A T G A G C T G T C A A G T C C G T A A T G C C T G A A T G C C G T A A G T C C G T A C G T A G C A T C A G T G C T A T A C G A T G C G C T A T G A C

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAATTTGAGC-
GWAAYHTGABMC
 A C G T A G T C G T C A C G T A A C G T C G A T A C G T A T C G C G T A C T A G A G T C A C G T
A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

Gfi1b/MA0483.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAATTTGAGC-
AAATCACAGCA
 A G T C G T C A C G T A A C G T C G A T A C G T A T C G C G T A C T A G A G T C A C G T
T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A

MSX1/MA0666.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAATTTGAGC
CCAATTAG---
 A C G T A G T C G T C A C G T A A C G T C G A T A C G T A T C G C G T A C T A G A G T C
A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T A C G T A C G T

Msx3/MA0709.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CAATTTGAGC
CCAATTAA---
 A C G T A G T C G T C A C G T A A C G T C G A T A C G T A T C G C G T A C T A G A G T C
T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.58
Offset:6
Orientation:forward strand
Alignment:CAATTTGAGC-
------CAGCC
 A G T C G T C A C G T A A C G T C G A T A C G T A T C G C G T A C T A G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C