Information for 5-CTMACCCTTGGTG (Motif 9)

A G T C C G A T T G A C C T G A A G T C A G T C A G T C A G C T A C G T A C T G A C T G A C G T A C T G
Reverse Opposite:
A G T C C G T A A G T C A G T C C G T A C T G A C T A G A C T G A C T G A G C T A C G T C G T A A C T G
p-value:1e-10
log p-value:-2.511e+01
Information Content per bp:1.866
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.7 +/- 24.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTMACCCTTGGTG
CTGACCTTTG---
 A G T C C G A T T G A C C T G A A G T C A G T C A G T C A G C T A C G T A C T G A C T G A C G T A C T G
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTMACCCTTGGTG-----
-TGACCTTTCGTGACCTT
 A G T C C G A T T G A C C T G A A G T C A G T C A G T C A G C T A C G T A C T G A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A G C T C T A G C G T A T G A C G T A C A G C T A G C T A G C T T A G C C A T G A G C T A C T G T G C A G T A C T A G C A G C T G A C T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTMACCCTTGGTG--
-TCACCTCTGGGCAG
 A G T C C G A T T G A C C T G A A G T C A G T C A G T C A G C T A C G T A C T G A C T G A C G T A C T G A C G T A C G T
A C G T G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CTMACCCTTGGTG--
---TCCCCTGGGGAC
 A G T C C G A T T G A C C T G A A G T C A G T C A G T C A G C T A C G T A C T G A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTMACCCTTGGTG----
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A G T C C G A T T G A C C T G A A G T C A G T C A G T C A G C T A C G T A C T G A C T G A C G T A C T G A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CTMACCCTTGGTG----
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A G T C C G A T T G A C C T G A A G T C A G T C A G T C A G C T A C G T A C T G A C T G A C G T A C T G A C G T A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0158.1_Rfx3_2/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CTMACCCTTGGTG---------
ACTGACCCTTGGTTACCACAAAG
 A C G T A G T C C G A T T G A C C T G A A G T C A G T C A G T C A G C T A C G T A C T G A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CTMACCCTTGGTG--
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A G T C C G A T T G A C C T G A A G T C A G T C A G T C A G C T A C G T A C T G A C T G A C G T A C T G A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CTMACCCTTGGTG--
---CCCCCTGCTGTG
 A G T C C G A T T G A C C T G A A G T C A G T C A G T C A G C T A C G T A C T G A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTMACCCTTGGTG
-TGACCYCT----
 A G T C C G A T T G A C C T G A A G T C A G T C A G T C A G C T A C G T A C T G A C T G A C G T A C T G
A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T