Information for 4-AGATGCTGGC (Motif 15)

G T C A A T C G C G T A A C G T C T A G G A T C G A C T A C T G A C T G G T A C
Reverse Opposite:
A C T G A G T C A G T C C G T A C T A G A G T C G T C A A C G T T A G C A C G T
p-value:1e-10
log p-value:-2.325e+01
Information Content per bp:1.784
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif3.10%
Number of Background Sequences with motif46.0
Percentage of Background Sequences with motif0.39%
Average Position of motif in Targets41.7 +/- 15.8bp
Average Position of motif in Background47.9 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.68
Offset:5
Orientation:forward strand
Alignment:AGATGCTGGC-
-----TTGGCA
 G T C A A T C G C G T A A C G T C T A G G A T C G A C T A C T G A C T G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:AGATGCTGGC---
----NTTGGCANN
 G T C A A T C G C G T A A C G T C T A G G A T C G A C T A C T G A C T G G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:AGATGCTGGC--
---GGTTGGCAT
 G T C A A T C G C G T A A C G T C T A G G A T C G A C T A C T G A C T G G T A C A C G T A C G T
A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

YY1(Zf)/Promoter/Homer

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGATGCTGGC
CAAGATGGCGGC
 A C G T A C G T G T C A A T C G C G T A A C G T C T A G G A T C G A C T A C T G A C T G G T A C
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGATGCTGGC-----
NGTAGGTTGGCATNNN
 A C G T G T C A A T C G C G T A A C G T C T A G G A T C G A C T A C T G A C T G G T A C A C G T A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

GCM2/MA0767.1/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGATGCTGGC-
-TATGCGGGTA
 G T C A A T C G C G T A A C G T C T A G G A T C G A C T A C T G A C T G G T A C A C G T
A C G T A C G T T C G A A G C T T C A G A T G C C A T G A C T G C T A G G A C T C T G A

PB0024.1_Gcm1_1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AGATGCTGGC----
NNNNATGCGGGTNNNN
 A C G T A C G T G T C A A T C G C G T A A C G T C T A G G A T C G A C T A C T G A C T G G T A C A C G T A C G T A C G T A C G T
G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AGATGCTGGC--
---TNNGGGCAG
 G T C A A T C G C G T A A C G T C T A G G A T C G A C T A C T G A C T G G T A C A C G T A C G T
A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

GCM1/MA0646.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AGATGCTGGC--
-CATGCGGGTAC
 G T C A A T C G C G T A A C G T C T A G G A T C G A C T A C T G A C T G G T A C A C G T A C G T
A C G T A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AGATGCTGGC--
----CTTGGCAA
 G T C A A T C G C G T A A C G T C T A G G A T C G A C T A C T G A C T G G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A