Information for 7-CATTKSAATG (Motif 7)

A G T C G C T A A C G T G A C T A C T G A T C G C G T A C G T A C G A T T C A G
Reverse Opposite:
A G T C G C T A A C G T A C G T T A G C G T A C C T G A G T C A C G A T A C T G
p-value:1e-14
log p-value:-3.355e+01
Information Content per bp:1.750
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif5.12%
Number of Background Sequences with motif554.9
Percentage of Background Sequences with motif1.15%
Average Position of motif in Targets53.5 +/- 28.8bp
Average Position of motif in Background49.5 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CATTKSAATG
-ATTTGAATT
 A G T C G C T A A C G T G A C T A C T G A T C G C G T A C G T A C G A T T C A G
A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CATTKSAATG--
--TTTGAAACCG
 A G T C G C T A A C G T G A C T A C T G A T C G C G T A C G T A C G A T T C A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:3
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----CATTKSAATG
ATTTGCATAACAAAG
 A C G T A C G T A C G T A C G T A C G T A G T C G C T A A C G T G A C T A C T G A T C G C G T A C G T A C G A T T C A G
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CATTKSAATG
ATTTGCATAACAATG
 A C G T A C G T A C G T A C G T A C G T A G T C G C T A A C G T G A C T A C T G A T C G C G T A C G T A C G A T T C A G
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

TEAD3/MA0808.1/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CATTKSAATG-
---TGGAATGT
 A G T C G C T A A C G T G A C T A C T G A T C G C G T A C G T A C G A T T C A G A C G T
A C G T A C G T A C G T G C A T C T A G A C T G G C T A C G T A A C G T A C T G G A C T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CATTKSAATG
CTCATTTGCATW
 A C G T A C G T A G T C G C T A A C G T G A C T A C T G A T C G C G T A C G T A C G A T T C A G
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

PB0079.1_Sry_1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CATTKSAATG---
NANTATTATAATTNNN
 A C G T A C G T A C G T A G T C G C T A A C G T G A C T A C T G A T C G C G T A C G T A C G A T T C A G A C G T A C G T A C G T
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

TEAD1/MA0090.2/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CATTKSAATG--
--NTGGAATGTG
 A G T C G C T A A C G T G A C T A C T G A T C G C G T A C G T A C G A T T C A G A C G T A C G T
A C G T A C G T C T G A G C A T T C A G C A T G C G T A T C G A C A G T A C T G A G C T C T A G

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CATTKSAATG-
-NCTGGAATGC
 A G T C G C T A A C G T G A C T A C T G A T C G C G T A C G T A C G A T T C A G A C G T
A C G T G A T C G T A C C G A T A C T G A C T G C G T A C G T A A C G T A C T G G A T C

TEAD4/MA0809.1/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CATTKSAATG--
--NTGGAATGTN
 A G T C G C T A A C G T G A C T A C T G A T C G C G T A C G T A C G A T T C A G A C G T A C G T
A C G T A C G T C T G A G C A T C T A G T C A G G C T A C G T A G C A T A C T G G A C T A C T G