Information for 5-AGGCTTTGAA (Motif 10)

C G T A A C T G C T A G A T G C A G C T A C G T A C G T A T C G C G T A C T G A
Reverse Opposite:
A G C T G C A T A T G C G T C A T G C A C T G A A T C G G A T C A G T C A C G T
p-value:1e-10
log p-value:-2.341e+01
Information Content per bp:1.842
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.72%
Number of Background Sequences with motif187.5
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets44.5 +/- 28.9bp
Average Position of motif in Background51.1 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:AGGCTTTGAA--
--CCTTTGATGT
 C G T A A C T G C T A G A T G C A G C T A C G T A C G T A T C G C G T A C T G A A C G T A C G T
A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:AGGCTTTGAA----
----TTTGAAACCG
 C G T A A C T G C T A G A T G C A G C T A C G T A C G T A T C G C G T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AGGCTTTGAA--
--CCTTTGAWGT
 C G T A A C T G C T A G A T G C A G C T A C G T A C G T A T C G C G T A C T G A A C G T A C G T
A C G T A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGGCTTTGAA----
TNCCTTTGATCTTN
 C G T A A C T G C T A G A T G C A G C T A C G T A C G T A T C G C G T A C T G A A C G T A C G T A C G T A C G T
C A G T A G C T A G T C A G T C A G C T A G C T A C G T A T C G C G T A C G A T T A G C G A C T A G C T G A C T

LIN54/MA0619.1/Jaspar

Match Rank:5
Score:0.64
Offset:3
Orientation:forward strand
Alignment:AGGCTTTGAA--
---ATTTGAATT
 C G T A A C T G C T A G A T G C A G C T A C G T A C G T A T C G C G T A C T G A A C G T A C G T
A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGGCTTTGAA--
TNCCTTTGATGT
 C G T A A C T G C T A G A T G C A G C T A C G T A C G T A T C G C G T A C T G A A C G T A C G T
C A G T A T G C A G T C A G T C A G C T A C G T A C G T T A C G C G T A C G A T T A C G G A C T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGGCTTTGAA
TGACCTTGAN
 C G T A A C T G C T A G A T G C A G C T A C G T A C G T A T C G C G T A C T G A
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

Nr5a2/MA0505.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AGGCTTTGAA---
GCTGACCTTGAACTN
 A C G T A C G T C G T A A C T G C T A G A T G C A G C T A C G T A C G T A T C G C G T A C T G A A C G T A C G T A C G T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

PB0013.1_Eomes_1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AGGCTTTGAA----
GAAAAGGTGTGAAAATT
 A C G T A C G T A C G T C G T A A C T G C T A G A T G C A G C T A C G T A C G T A T C G C G T A C T G A A C G T A C G T A C G T A C G T
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGGCTTTGAA
AGGCCTNG--
 C G T A A C T G C T A G A T G C A G C T A C G T A C G T A T C G C G T A C T G A
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T