Information for 13-CAATGGGAAG (Motif 18)

T G A C C G T A C T G A A C G T A C T G A C T G A C T G T C G A C G T A A C T G
Reverse Opposite:
G T A C C G A T A G C T T G A C A G T C A G T C G T C A G A C T C G A T A C T G
p-value:1e-8
log p-value:-1.863e+01
Information Content per bp:1.830
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.08%
Number of Background Sequences with motif187.9
Percentage of Background Sequences with motif0.39%
Average Position of motif in Targets52.9 +/- 29.2bp
Average Position of motif in Background51.7 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)2.5
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.78
Offset:-6
Orientation:reverse strand
Alignment:------CAATGGGAAG-
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C G T A C T G A C T G A C T G T C G A C G T A A C T G A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

PB0098.1_Zfp410_1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CAATGGGAAG-----
TATTATGGGATGGATAA
 A C G T A C G T T G A C C G T A C T G A A C G T A C T G A C T G A C T G T C G A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C G A T T C G A C A G T C G A T G T C A C G A T C A T G C A T G C A T G C T G A C A G T C T A G A C T G T G C A C A G T C G T A T G C A

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----CAATGGGAAG
VRAACAATGG----
 A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C G T A C T G A C T G A C T G T C G A C G T A A C T G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:4
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CAATGGGAAG-
-AATGGAAAAT
 T G A C C G T A C T G A A C G T A C T G A C T G A C T G T C G A C G T A A C T G A C G T
A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T

SOX9/MA0077.1/Jaspar

Match Rank:5
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CAATGGGAAG
GAACAATGG----
 A C G T A C G T A C G T T G A C C G T A C T G A A C G T A C T G A C T G A C T G T C G A C G T A A C T G
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CAATGGGAAG
AACAAAGG----
 A C G T A C G T T G A C C G T A C T G A A C G T A C T G A C T G A C T G T C G A C G T A A C T G
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CAATGGGAAG
GAACAATGGN---
 A C G T A C G T A C G T T G A C C G T A C T G A A C G T A C T G A C T G A C T G T C G A C G T A A C T G
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CAATGGGAAG-
-NATGGAAAAN
 T G A C C G T A C T G A A C G T A C T G A C T G A C T G T C G A C G T A A C T G A C G T
A C G T G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CAATGGGAAG
RACAAWGG----
 A C G T A C G T T G A C C G T A C T G A A C G T A C T G A C T G A C T G T C G A C G T A A C T G
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CAATGGGAAG-
-CSTGGGAAAD
 T G A C C G T A C T G A A C G T A C T G A C T G A C T G T C G A C G T A A C T G A C G T
A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A