Information for 5-VAGCCACAGAGDBCAC (Motif 6)

T A C G C G T A C T A G A G T C A G T C C T G A A G T C C G T A A C T G C G T A A C T G C G T A A T G C A G T C G T C A A T G C
Reverse Opposite:
A T C G A C G T A C T G T A C G G A C T A G T C A C G T A G T C A C G T A C T G A G C T A C T G C T A G A G T C A C G T A G T C
p-value:1e-15
log p-value:-3.601e+01
Information Content per bp:1.822
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.1 +/- 21.0bp
Average Position of motif in Background38.8 +/- 18.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1/MA0002.2/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:VAGCCACAGAGDBCAC
AAACCACAGAN-----
 T A C G C G T A C T A G A G T C A G T C C T G A A G T C C G T A A C T G C G T A A C T G C G T A A T G C A G T C G T C A A T G C
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.63
Offset:6
Orientation:forward strand
Alignment:VAGCCACAGAGDBCAC
------CAAAGGTCAG
 T A C G C G T A C T A G A G T C A G T C C T G A A G T C C G T A A C T G C G T A A C T G C G T A A T G C A G T C G T C A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:VAGCCACAGAGDBCAC
AAACCACANN------
 T A C G C G T A C T A G A G T C A G T C C T G A A G T C C G T A A C T G C G T A A C T G C G T A A T G C A G T C G T C A A T G C
G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:VAGCCACAGAGDBCAC
AAACCACAGC------
 T A C G C G T A C T A G A G T C A G T C C T G A A G T C C G T A A C T G C G T A A C T G C G T A A T G C A G T C G T C A A T G C
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-VAGCCACAGAGDBCAC
NAAACCACAG-------
 A C G T T A C G C G T A C T A G A G T C A G T C C T G A A G T C C G T A A C T G C G T A A C T G C G T A A T G C A G T C G T C A A T G C
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-VAGCCACAGAGDBCAC
CANAGNNCAAAGTCCA-
 A C G T T A C G C G T A C T A G A G T C A G T C C T G A A G T C C G T A A C T G C G T A A C T G C G T A A T G C A G T C G T C A A T G C
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-VAGCCACAGAGDBCAC
NWAACCACADNN-----
 A C G T T A C G C G T A C T A G A G T C A G T C C T G A A G T C C G T A A C T G C G T A A C T G C G T A A T G C A G T C G T C A A T G C
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:VAGCCACAGAGDBCAC---
---TCTCAAAGGTCACCTG
 T A C G C G T A C T A G A G T C A G T C C T G A A G T C C G T A A C T G C G T A A C T G C G T A A T G C A G T C G T C A A T G C A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

HNF4G/MA0484.1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:VAGCCACAGAGDBCAC
AGAGTCCAAAGTCCA-
 T A C G C G T A C T A G A G T C A G T C C T G A A G T C C G T A A C T G C G T A A C T G C G T A A T G C A G T C G T C A A T G C
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.56
Offset:8
Orientation:forward strand
Alignment:VAGCCACAGAGDBCAC
--------AAGGTCAC
 T A C G C G T A C T A G A G T C A G T C C T G A A G T C C G T A A C T G C G T A A C T G C G T A A T G C A G T C G T C A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C