Information for 6-YTTTAKGGCCGRG (Motif 5)

A G T C C A G T A G C T A C G T C G T A A C T G A C T G C T A G G T A C A G T C A T C G C T G A A C T G
Reverse Opposite:
A G T C G A C T A T G C A C T G A C T G A G T C A G T C G T A C A C G T C G T A C T G A G T C A T C A G
p-value:1e-16
log p-value:-3.796e+01
Information Content per bp:1.839
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.19%
Number of Background Sequences with motif8.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets57.1 +/- 18.7bp
Average Position of motif in Background45.2 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:YTTTAKGGCCGRG
TTTTATGGCTN--
 A G T C C A G T A G C T A C G T C G T A A C T G A C T G C T A G G T A C A G T C A T C G C T G A A C T G
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:2
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----YTTTAKGGCCGRG
ANTAATTTTATGGCCGN-
 A C G T A C G T A C G T A C G T A C G T A G T C C A G T A G C T A C G T C G T A A C T G A C T G C T A G G T A C A G T C A T C G C T G A A C T G
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--YTTTAKGGCCGRG
DGWTTTATGRCN---
 A C G T A C G T A G T C C A G T A G C T A C G T C G T A A C T G A C T G C T A G G T A C A G T C A T C G C T G A A C T G
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-YTTTAKGGCCGRG
NTTTTATGAC----
 A C G T A G T C C A G T A G C T A C G T C G T A A C T G A C T G C T A G G T A C A G T C A T C G C T G A A C T G
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:5
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---YTTTAKGGCCGRG
NAATTTTATTACCNNN
 A C G T A C G T A C G T A G T C C A G T A G C T A C G T C G T A A C T G A C T G C T A G G T A C A G T C A T C G C T G A A C T G
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:YTTTAKGGCCGRG
TTTTATTGC----
 A G T C C A G T A G C T A C G T C G T A A C T G A C T G C T A G G T A C A G T C A T C G C T G A A C T G
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-YTTTAKGGCCGRG
NTTTTATTACN---
 A C G T A G T C C A G T A G C T A C G T C G T A A C T G A C T G C T A G G T A C A G T C A T C G C T G A A C T G
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T A C G T A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---YTTTAKGGCCGRG
NAATTTTATTACCTNN
 A C G T A C G T A C G T A G T C C A G T A G C T A C G T C G T A A C T G A C T G C T A G G T A C A G T C A T C G C T G A A C T G
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:YTTTAKGGCCGRG
TTTAATTGCN---
 A G T C C A G T A G C T A C G T C G T A A C T G A C T G C T A G G T A C A G T C A T C G C T G A A C T G
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--YTTTAKGGCCGRG
TGATTTATGGCC---
 A C G T A C G T A G T C C A G T A G C T A C G T C G T A A C T G A C T G C T A G G T A C A G T C A T C G C T G A A C T G
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T A C G T