Information for 10-GAGCCAGGCAGGA (Motif 12)

T C A G C G T A A C T G A T G C A G T C C G T A A C T G A C T G A T G C G T C A A C T G A T C G C G T A
Reverse Opposite:
A C G T A T G C G T A C A C G T A T C G G T A C G T A C G A C T A C T G A T C G A G T C A C G T A G T C
p-value:1e-9
log p-value:-2.223e+01
Information Content per bp:1.802
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif46.0
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets51.7 +/- 28.9bp
Average Position of motif in Background57.8 +/- 22.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GAGCCAGGCAGGA-
SCAGYCADGCATGAC
 A C G T T C A G C G T A A C T G A T G C A G T C C G T A A C T G A C T G A T G C G T C A A C T G A T C G C G T A A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GAGCCAGGCAGGA--
GCAGCCAAGCGTGACN
 A C G T T C A G C G T A A C T G A T G C A G T C C G T A A C T G A C T G A T G C G T C A A C T G A T C G C G T A A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:3
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GAGCCAGGCAGGA-
----CWGGCGGGAA
 T C A G C G T A A C T G A T G C A G T C C G T A A C T G A C T G A T G C G T C A A C T G A T C G C G T A A C G T
A C G T A C G T A C G T A C G T T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GAGCCAGGCAGGA
AGGTGNCAGACAG--
 A C G T A C G T T C A G C G T A A C T G A T G C A G T C C G T A A C T G A C T G A T G C G T C A A C T G A T C G C G T A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GAGCCAGGCAGGA---
GGAAGGAAGGAAGGAAGG
 A C G T A C G T T C A G C G T A A C T G A T G C A G T C C G T A A C T G A C T G A T G C G T C A A C T G A T C G C G T A A C G T A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:6
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GAGCCAGGCAGGA
AAGGKGRCGCAGGCA---
 A C G T A C G T A C G T A C G T A C G T T C A G C G T A A C T G A T G C A G T C C G T A A C T G A C T G A T G C G T C A A C T G A T C G C G T A
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GAGCCAGGCAGGA--
CAAATCCAGACATCACA
 A C G T A C G T T C A G C G T A A C T G A T G C A G T C C G T A A C T G A C T G A T G C G T C A A C T G A T C G C G T A A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:8
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GAGCCAGGCAGGA-----
------NDCAGGAARTNN
 T C A G C G T A A C T G A T G C A G T C C G T A A C T G A C T G A T G C G T C A A C T G A T C G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C T G A T A G C G T C A A C T G A C T G C G T A G C T A T C A G G A C T T C A G T A C G

PAX5/MA0014.2/Jaspar

Match Rank:9
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----GAGCCAGGCAGGA-
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T A C G T A C G T T C A G C G T A A C T G A T G C A G T C C G T A A C T G A C T G A T G C G T C A A C T G A T C G C G T A A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GAGCCAGGCAGGA
AGGTGHCAGACA---
 A C G T A C G T T C A G C G T A A C T G A T G C A G T C C G T A A C T G A C T G A T G C G T C A A C T G A T C G C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T