Information for 2-CCACHAGGGGGCA (Motif 3)

T A G C A G T C C G T A A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T G A
Reverse Opposite:
A G C T A C T G A G T C A G T C G T A C A G T C A G T C G A C T C T A G A T C G C G A T A C T G A C T G
p-value:1e-33
log p-value:-7.810e+01
Information Content per bp:1.753
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif4.31%
Number of Background Sequences with motif93.3
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets49.7 +/- 25.5bp
Average Position of motif in Background48.7 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-CCACHAGGGGGCA------
GCCASCAGGGGGCGCYVNNG
 A C G T T A G C A G T C C G T A A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.91
Offset:-3
Orientation:reverse strand
Alignment:---CCACHAGGGGGCA----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T T A G C A G T C C G T A A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T G A A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---CCACHAGGGGGCA---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T T A G C A G T C C G T A A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T G A A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

PB0101.1_Zic1_1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCACHAGGGGGCA
CACCCCCGGGGGGG-
 A C G T A C G T T A G C A G T C C G T A A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T G A
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCACHAGGGGGCA
NCCCCCCCGGGGGGN
 A C G T A C G T T A G C A G T C C G T A A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T G A
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CCACHAGGGGGCA-
-----NGTGGGCAT
 T A G C A G T C C G T A A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T G A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T

PB0102.1_Zic2_1/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCACHAGGGGGCA
ACCCCCCCGGGGGGN
 A C G T A C G T T A G C A G T C C G T A A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T G A
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCACHAGGGGGCA
NCNCAGCGGGGGGTC
 A C G T A C G T T A G C A G T C C G T A A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T G A
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

PB0076.1_Sp4_1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCACHAGGGGGCA-----
-NNNAAGGGGGCGGGNNN
 T A G C A G T C C G T A A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T G A A C G T A C G T A C G T A C G T A C G T
A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CCACHAGGGGGCA-
-----GGTTGGCAT
 T A G C A G T C C G T A A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T G A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T