Information for 5-KCCBCWASAG (Motif 4)

A C T G T A G C T G A C A G C T A T G C G C A T C T G A T A C G C T G A A C T G
Reverse Opposite:
T G A C G A C T A T G C G A C T C G T A T A C G T C G A A C T G A T C G T G A C
p-value:1e-12
log p-value:-2.809e+01
Information Content per bp:1.459
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.57%
Number of Background Sequences with motif141.6
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets44.6 +/- 22.8bp
Average Position of motif in Background50.6 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:1
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-KCCBCWASAG--
TGCCCTNAGGGCA
 A C G T A C T G T A G C T G A C A G C T A T G C G C A T C T G A T A C G C T G A A C T G A C G T A C G T
G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-KCCBCWASAG--
TGCCCTNAGGGCA
 A C G T A C T G T A G C T G A C A G C T A T G C G C A T C T G A T A C G C T G A A C T G A C G T A C G T
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:KCCBCWASAG
NSCACTYVAV
 A C T G T A G C T G A C A G C T A T G C G C A T C T G A T A C G C T G A A C T G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-KCCBCWASAG--
TGCCCNNAGGGCA
 A C G T A C T G T A G C T G A C A G C T A T G C G C A T C T G A T A C G C T G A A C T G A C G T A C G T
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-KCCBCWASAG-
GTCCCCAGGGGA
 A C G T A C T G T A G C T G A C A G C T A T G C G C A T C T G A T A C G C T G A A C T G A C G T
C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:KCCBCWASAG----------
GCCASCAGGGGGCGCYVNNG
 A C T G T A G C T G A C A G C T A T G C G C A T C T G A T A C G C T G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--KCCBCWASAG--------
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C T G T A G C T G A C A G C T A T G C G C A T C T G A T A C G C T G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

MZF1/MA0056.1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:KCCBCWASAG
TCCCCA----
 A C T G T A G C T G A C A G C T A T G C G C A T C T G A T A C G C T G A A C T G
A G C T A G T C G T A C A G T C G T A C T C G A A C G T A C G T A C G T A C G T

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-KCCBCWASAG---
NTGCCCTAGGGCAA
 A C G T A C T G T A G C T G A C A G C T A T G C G C A T C T G A T A C G C T G A A C T G A C G T A C G T A C G T
C G T A G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A G C T A

CTCF/MA0139.1/Jaspar

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--KCCBCWASAG-------
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C T G T A G C T G A C A G C T A T G C G C A T C T G A T A C G C T G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A