Information for 4-STCTCWGTCACAGTCA (Motif 3)

A T G C A C G T A T G C C G A T A T G C C G T A A C T G A G C T A G T C C G T A A G T C C G T A A C T G C G A T T A G C T C G A
Reverse Opposite:
A G C T A T C G C G T A T G A C C G A T A C T G A C G T C T A G T C G A A G T C C G A T A T C G C G T A A T C G G T C A T A C G
p-value:1e-13
log p-value:-3.132e+01
Information Content per bp:1.755
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.7 +/- 20.9bp
Average Position of motif in Background51.7 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.58
Offset:6
Orientation:forward strand
Alignment:STCTCWGTCACAGTCA----
------GTCACGCTCNCTGA
 A T G C A C G T A T G C C G A T A T G C C G T A A C T G A G C T A G T C C G T A A G T C C G T A A C T G C G A T T A G C T C G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.57
Offset:5
Orientation:forward strand
Alignment:STCTCWGTCACAGTCA
-----AGTCACGC---
 A T G C A C G T A T G C C G A T A T G C C G T A A C T G A G C T A G T C C G T A A G T C C G T A A C T G C G A T T A G C T C G A
A C G T A C G T A C G T A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:3
Score:0.57
Offset:4
Orientation:forward strand
Alignment:STCTCWGTCACAGTCA----
----CAATCACTGGCAGAAT
 A T G C A C G T A T G C C G A T A T G C C G T A A C T G A G C T A G T C C G T A A G T C C G T A A C T G C G A T T A G C T C G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:STCTCWGTCACAGTCA
-TGTCTGDCACCT---
 A T G C A C G T A T G C C G A T A T G C C G T A A C T G A G C T A G T C C G T A A G T C C G T A A C T G C G A T T A G C T C G A
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T

FOS::JUN/MA0099.2/Jaspar

Match Rank:5
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:STCTCWGTCACAGTCA
---TGAGTCA------
 A T G C A C G T A T G C C G A T A T G C C G T A A C T G A G C T A G T C C G T A A G T C C G T A A C T G C G A T T A G C T C G A
A C G T A C G T A C G T G A C T A T C G G C T A A C T G A C G T G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:STCTCWGTCACAGTCA
CTGTCTGTCACCT---
 A T G C A C G T A T G C C G A T A T G C C G T A A C T G A G C T A G T C C G T A A G T C C G T A A C T G C G A T T A G C T C G A
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-STCTCWGTCACAGTCA
SCTGTCAVTCAV-----
 A C G T A T G C A C G T A T G C C G A T A T G C C G T A A C T G A G C T A G T C C G T A A G T C C G T A A C T G C G A T T A G C T C G A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:STCTCWGTCACAGTCA
---CCTGTCAA-----
 A T G C A C G T A T G C C G A T A T G C C G T A A C T G A G C T A G T C C G T A A G T C C G T A A C T G C G A T T A G C T C G A
A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-STCTCWGTCACAGTCA
NCTGTCAATCAN-----
 A C G T A T G C A C G T A T G C C G A T A T G C C G T A A C T G A G C T A G T C C G T A A G T C C G T A A C T G C G A T T A G C T C G A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T A C G T A C G T

Nfe2l2/MA0150.2/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:STCTCWGTCACAGTCA
TGCTGAGTCATNNTG-
 A T G C A C G T A T G C C G A T A T G C C G T A A C T G A G C T A G T C C G T A A G T C C G T A A C T G C G A T T A G C T C G A
G C A T A T C G A T G C G A C T C T A G C G T A T A C G A C G T G T A C C G T A A G C T A C T G A T G C G A C T C A T G A C G T