Information for 12-TGCATGCAAA (Motif 11)

A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A
p-value:1e-4
log p-value:-1.089e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.39%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.2 +/- 28.3bp
Average Position of motif in Background64.6 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU2F2/MA0507.1/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:TGCATGCAAA----
-ATATGCAAATNNN
 A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Pou2f3/MA0627.1/Jaspar

Match Rank:2
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-TGCATGCAAA-----
TTGTATGCAAATTAGA
 A C G T A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:3
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-TGCATGCAAA-----
TTGTATGCAAATTAGA
 A C G T A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.74
Offset:2
Orientation:forward strand
Alignment:TGCATGCAAA----
--TATGCWAATBAV
 A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

PH0144.1_Pou2f2/Jaspar

Match Rank:5
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TGCATGCAAA-----
TTGTATGCAAATTAGA
 A C G T A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:TGCATGCAAA-
-TTATGCAAAT
 A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A C G T A C G T A A C G T
A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

POU5F1B/MA0792.1/Jaspar

Match Rank:7
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TGCATGCAAA-
--TATGCAAAT
 A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A C G T A C G T A A C G T
A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TGCATGCAAA----
--WATGCAAATGAG
 A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TGCATGCAAA-
-ATATGCAAAT
 A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A C G T A C G T A A C G T
A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:10
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---TGCATGCAAA--
ATTTGCATACAATGG
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A C G T A C G T A A C G T A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G