Information for 3-GCGCCCTCTA (Motif 3)

A T C G G A T C C A T G T A G C A G T C G T A C A G C T T G A C A C G T C G T A
Reverse Opposite:
G C A T T G C A A C T G C T G A A C T G A C T G A T C G G T A C C T A G A T G C
p-value:1e-21
log p-value:-4.987e+01
Information Content per bp:1.689
Number of Target Sequences with motif69.0
Percentage of Target Sequences with motif8.26%
Number of Background Sequences with motif944.7
Percentage of Background Sequences with motif2.01%
Average Position of motif in Targets51.4 +/- 23.7bp
Average Position of motif in Background49.2 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----GCGCCCTCTA-----
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A T C G G A T C C A T G T A G C A G T C G T A C A G C T T G A C A C G T C G T A A C G T A C G T A C G T A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

PB0052.1_Plagl1_1/Jaspar

Match Rank:2
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------GCGCCCTCTA
NNNGGGGCGCCCCCNN
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G G A T C C A T G T A G C A G T C G T A C A G C T T G A C A C G T C G T A
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

PB0076.1_Sp4_1/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GCGCCCTCTA---
GGTCCCGCCCCCTTCTC
 A C G T A C G T A C G T A C G T A T C G G A T C C A T G T A G C A G T C G T A C A G C T T G A C A C G T C G T A A C G T A C G T A C G T
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCGCCCTCTA-------
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A T C G G A T C C A T G T A G C A G T C G T A C A G C T T G A C A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0009.1_E2F3_1/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GCGCCCTCTA--
ANCGCGCGCCCTTNN
 A C G T A C G T A C G T A T C G G A T C C A T G T A G C A G T C G T A C A G C T T G A C A C G T C G T A A C G T A C G T
C G T A C G A T T A G C C T A G T A G C A T C G A T G C A C T G A G T C A T G C G A T C C G A T G C A T C G T A A G C T

PB0128.1_Gcm1_2/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCGCCCTCTA------
NTCNTCCCCTATNNGNN
 A C G T A T C G G A T C C A T G T A G C A G T C G T A C A G C T T G A C A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A

PB0008.1_E2F2_1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GCGCCCTCTA--
NTCGCGCGCCTTNNN
 A C G T A C G T A C G T A T C G G A T C C A T G T A G C A G T C G T A C A G C T T G A C A C G T C G T A A C G T A C G T
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCGCCCTCTA-------
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A T C G G A T C C A T G T A G C A G T C G T A C A G C T T G A C A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

POL006.1_BREu/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCGCCCTCTA
GGCGCGCT---
 A C G T A T C G G A T C C A T G T A G C A G T C G T A C A G C T T G A C A C G T C G T A
C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GCGCCCTCTA
RGTTAGTGCCCY---
 A C G T A C G T A C G T A C G T A C G T A T C G G A T C C A T G T A G C A G T C G T A C A G C T T G A C A C G T C G T A
C T G A C T A G A C G T G A C T G T C A A C T G A G C T A C T G A T G C G T A C G T A C A G C T A C G T A C G T A C G T