Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-53 | -1.223e+02 | 0.0000 | 63.0 | 7.88% | 229.1 | 0.48% | motif file (matrix) |
svg |
2 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-47 | -1.089e+02 | 0.0000 | 143.0 | 17.88% | 2008.0 | 4.21% | motif file (matrix) |
svg |
3 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-45 | -1.044e+02 | 0.0000 | 58.0 | 7.25% | 245.5 | 0.51% | motif file (matrix) |
svg |
4 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-38 | -8.789e+01 | 0.0000 | 124.0 | 15.50% | 1848.5 | 3.87% | motif file (matrix) |
svg |
5 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-37 | -8.626e+01 | 0.0000 | 173.0 | 21.62% | 3469.0 | 7.26% | motif file (matrix) |
svg |
6 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-34 | -7.914e+01 | 0.0000 | 66.0 | 8.25% | 540.4 | 1.13% | motif file (matrix) |
svg |
7 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-32 | -7.480e+01 | 0.0000 | 106.0 | 13.25% | 1578.6 | 3.31% | motif file (matrix) |
svg |
8 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-32 | -7.402e+01 | 0.0000 | 158.0 | 19.75% | 3288.3 | 6.89% | motif file (matrix) |
svg |
9 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-31 | -7.205e+01 | 0.0000 | 125.0 | 15.62% | 2217.1 | 4.64% | motif file (matrix) |
svg |
10 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-28 | -6.607e+01 | 0.0000 | 90.0 | 11.25% | 1288.8 | 2.70% | motif file (matrix) |
svg |
11 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-27 | -6.446e+01 | 0.0000 | 124.0 | 15.50% | 2376.5 | 4.98% | motif file (matrix) |
svg |
12 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-27 | -6.442e+01 | 0.0000 | 102.0 | 12.75% | 1671.0 | 3.50% | motif file (matrix) |
svg |
13 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-23 | -5.495e+01 | 0.0000 | 138.0 | 17.25% | 3164.8 | 6.63% | motif file (matrix) |
svg |
14 |
| REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-21 | -4.863e+01 | 0.0000 | 16.0 | 2.00% | 20.1 | 0.04% | motif file (matrix) |
svg |
15 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-19 | -4.457e+01 | 0.0000 | 95.0 | 11.88% | 1946.1 | 4.08% | motif file (matrix) |
svg |
16 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-19 | -4.381e+01 | 0.0000 | 75.0 | 9.38% | 1307.2 | 2.74% | motif file (matrix) |
svg |
17 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-16 | -3.806e+01 | 0.0000 | 81.0 | 10.12% | 1657.6 | 3.47% | motif file (matrix) |
svg |
18 |
| Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer | 1e-16 | -3.784e+01 | 0.0000 | 49.0 | 6.12% | 672.4 | 1.41% | motif file (matrix) |
svg |
19 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-16 | -3.728e+01 | 0.0000 | 50.0 | 6.25% | 709.8 | 1.49% | motif file (matrix) |
svg |
20 |
| Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer | 1e-13 | -3.150e+01 | 0.0000 | 38.0 | 4.75% | 490.3 | 1.03% | motif file (matrix) |
svg |
21 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-13 | -3.052e+01 | 0.0000 | 78.0 | 9.75% | 1796.5 | 3.76% | motif file (matrix) |
svg |
22 |
| Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer | 1e-12 | -2.941e+01 | 0.0000 | 43.0 | 5.38% | 664.9 | 1.39% | motif file (matrix) |
svg |
23 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-12 | -2.822e+01 | 0.0000 | 112.0 | 14.00% | 3245.5 | 6.80% | motif file (matrix) |
svg |
24 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-11 | -2.748e+01 | 0.0000 | 80.0 | 10.00% | 1986.0 | 4.16% | motif file (matrix) |
svg |
25 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-11 | -2.705e+01 | 0.0000 | 157.0 | 19.62% | 5316.2 | 11.13% | motif file (matrix) |
svg |
26 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-11 | -2.562e+01 | 0.0000 | 82.0 | 10.25% | 2142.1 | 4.49% | motif file (matrix) |
svg |
27 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-10 | -2.442e+01 | 0.0000 | 129.0 | 16.12% | 4209.2 | 8.82% | motif file (matrix) |
svg |
28 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-8 | -1.929e+01 | 0.0000 | 324.0 | 40.50% | 14712.4 | 30.81% | motif file (matrix) |
svg |
29 |
| Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-7 | -1.628e+01 | 0.0000 | 25.0 | 3.12% | 417.2 | 0.87% | motif file (matrix) |
svg |
30 |
| E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-6 | -1.436e+01 | 0.0000 | 125.0 | 15.62% | 4796.6 | 10.05% | motif file (matrix) |
svg |
31 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-6 | -1.424e+01 | 0.0000 | 20.0 | 2.50% | 314.8 | 0.66% | motif file (matrix) |
svg |
32 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-6 | -1.423e+01 | 0.0000 | 35.0 | 4.38% | 812.0 | 1.70% | motif file (matrix) |
svg |
33 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-5 | -1.345e+01 | 0.0000 | 190.0 | 23.75% | 8204.1 | 17.18% | motif file (matrix) |
svg |
34 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-5 | -1.329e+01 | 0.0000 | 34.0 | 4.25% | 809.3 | 1.69% | motif file (matrix) |
svg |
35 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-5 | -1.217e+01 | 0.0001 | 147.0 | 18.38% | 6127.6 | 12.83% | motif file (matrix) |
svg |
36 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-5 | -1.156e+01 | 0.0001 | 30.0 | 3.75% | 727.6 | 1.52% | motif file (matrix) |
svg |
37 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-4 | -1.118e+01 | 0.0001 | 20.0 | 2.50% | 387.1 | 0.81% | motif file (matrix) |
svg |
38 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-4 | -1.097e+01 | 0.0002 | 229.0 | 28.62% | 10645.4 | 22.29% | motif file (matrix) |
svg |
39 |
| E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-4 | -1.093e+01 | 0.0002 | 109.0 | 13.63% | 4346.5 | 9.10% | motif file (matrix) |
svg |
40 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-4 | -1.092e+01 | 0.0002 | 35.0 | 4.38% | 947.1 | 1.98% | motif file (matrix) |
svg |
41 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-4 | -1.069e+01 | 0.0002 | 36.0 | 4.50% | 998.5 | 2.09% | motif file (matrix) |
svg |
42 |
| Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-4 | -1.050e+01 | 0.0002 | 121.0 | 15.12% | 4996.0 | 10.46% | motif file (matrix) |
svg |
43 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-4 | -1.038e+01 | 0.0003 | 40.0 | 5.00% | 1178.0 | 2.47% | motif file (matrix) |
svg |
44 |
| GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer | 1e-4 | -1.037e+01 | 0.0003 | 26.0 | 3.25% | 624.1 | 1.31% | motif file (matrix) |
svg |
45 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-4 | -9.889e+00 | 0.0004 | 51.0 | 6.38% | 1684.0 | 3.53% | motif file (matrix) |
svg |
46 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-4 | -9.622e+00 | 0.0005 | 21.0 | 2.62% | 469.6 | 0.98% | motif file (matrix) |
svg |
47 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-4 | -9.242e+00 | 0.0008 | 59.0 | 7.38% | 2094.4 | 4.39% | motif file (matrix) |
svg |
48 |
| Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer | 1e-3 | -9.168e+00 | 0.0008 | 75.0 | 9.38% | 2857.0 | 5.98% | motif file (matrix) |
svg |
49 |
| MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-3 | -8.418e+00 | 0.0016 | 52.0 | 6.50% | 1836.8 | 3.85% | motif file (matrix) |
svg |
50 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-3 | -8.122e+00 | 0.0022 | 37.0 | 4.62% | 1183.9 | 2.48% | motif file (matrix) |
svg |
51 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-3 | -7.806e+00 | 0.0029 | 26.0 | 3.25% | 736.0 | 1.54% | motif file (matrix) |
svg |
52 |
| Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer | 1e-3 | -7.799e+00 | 0.0029 | 88.0 | 11.00% | 3642.9 | 7.63% | motif file (matrix) |
svg |
53 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-3 | -7.546e+00 | 0.0036 | 78.0 | 9.75% | 3170.3 | 6.64% | motif file (matrix) |
svg |
54 |
| RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer | 1e-3 | -7.418e+00 | 0.0040 | 53.0 | 6.62% | 1966.2 | 4.12% | motif file (matrix) |
svg |
55 |
| PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer | 1e-3 | -7.409e+00 | 0.0040 | 20.0 | 2.50% | 516.7 | 1.08% | motif file (matrix) |
svg |
56 |
| Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer | 1e-3 | -7.371e+00 | 0.0041 | 43.0 | 5.38% | 1504.8 | 3.15% | motif file (matrix) |
svg |
57 |
| GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-3 | -7.176e+00 | 0.0049 | 57.0 | 7.12% | 2179.2 | 4.56% | motif file (matrix) |
svg |
58 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-3 | -6.989e+00 | 0.0058 | 38.0 | 4.75% | 1305.1 | 2.73% | motif file (matrix) |
svg |
59 |
| Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer | 1e-3 | -6.949e+00 | 0.0059 | 24.0 | 3.00% | 698.5 | 1.46% | motif file (matrix) |
svg |
60 |
| SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer | 1e-2 | -6.833e+00 | 0.0065 | 61.0 | 7.62% | 2407.9 | 5.04% | motif file (matrix) |
svg |
61 |
| ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -6.796e+00 | 0.0067 | 76.0 | 9.50% | 3156.0 | 6.61% | motif file (matrix) |
svg |
62 |
| MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer | 1e-2 | -6.775e+00 | 0.0067 | 79.0 | 9.88% | 3310.4 | 6.93% | motif file (matrix) |
svg |
63 |
| Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.546e+00 | 0.0083 | 120.0 | 15.00% | 5472.4 | 11.46% | motif file (matrix) |
svg |
64 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-2 | -6.162e+00 | 0.0120 | 31.0 | 3.88% | 1049.6 | 2.20% | motif file (matrix) |
svg |
65 |
| NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.052e+00 | 0.0132 | 7.0 | 0.88% | 106.9 | 0.22% | motif file (matrix) |
svg |
66 |
| Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer | 1e-2 | -6.035e+00 | 0.0132 | 18.0 | 2.25% | 499.7 | 1.05% | motif file (matrix) |
svg |
67 |
| Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer | 1e-2 | -5.616e+00 | 0.0198 | 6.0 | 0.75% | 86.8 | 0.18% | motif file (matrix) |
svg |
68 |
| Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.355e+00 | 0.0253 | 20.0 | 2.50% | 618.7 | 1.30% | motif file (matrix) |
svg |
69 |
| HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer | 1e-2 | -5.296e+00 | 0.0264 | 32.0 | 4.00% | 1161.4 | 2.43% | motif file (matrix) |
svg |
70 |
| RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer | 1e-2 | -5.249e+00 | 0.0273 | 35.0 | 4.38% | 1306.3 | 2.74% | motif file (matrix) |
svg |
71 |
| NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer | 1e-2 | -5.221e+00 | 0.0277 | 90.0 | 11.25% | 4094.9 | 8.58% | motif file (matrix) |
svg |
72 |
| Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-2 | -5.189e+00 | 0.0282 | 13.0 | 1.62% | 339.4 | 0.71% | motif file (matrix) |
svg |
73 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-2 | -5.097e+00 | 0.0305 | 42.0 | 5.25% | 1657.5 | 3.47% | motif file (matrix) |
svg |
74 |
| ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.048e+00 | 0.0316 | 33.0 | 4.12% | 1229.7 | 2.58% | motif file (matrix) |
svg |
75 |
| Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-2 | -5.019e+00 | 0.0321 | 103.0 | 12.88% | 4819.3 | 10.09% | motif file (matrix) |
svg |
76 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-2 | -4.943e+00 | 0.0342 | 38.0 | 4.75% | 1478.3 | 3.10% | motif file (matrix) |
svg |
77 |
| EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-2 | -4.910e+00 | 0.0349 | 83.0 | 10.38% | 3774.9 | 7.91% | motif file (matrix) |
svg |
78 |
| Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-2 | -4.851e+00 | 0.0365 | 49.0 | 6.12% | 2030.9 | 4.25% | motif file (matrix) |
svg |
79 |
| c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.811e+00 | 0.0375 | 16.0 | 2.00% | 479.9 | 1.01% | motif file (matrix) |
svg |
80 |
| Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-2 | -4.807e+00 | 0.0375 | 70.0 | 8.75% | 3109.4 | 6.51% | motif file (matrix) |
svg |
81 |
| Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer | 1e-2 | -4.736e+00 | 0.0394 | 62.0 | 7.75% | 2705.9 | 5.67% | motif file (matrix) |
svg |
82 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-2 | -4.700e+00 | 0.0404 | 31.0 | 3.88% | 1165.1 | 2.44% | motif file (matrix) |
svg |
83 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-2 | -4.688e+00 | 0.0404 | 75.0 | 9.38% | 3388.8 | 7.10% | motif file (matrix) |
svg |
84 |
| KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -4.648e+00 | 0.0415 | 125.0 | 15.62% | 6081.3 | 12.74% | motif file (matrix) |
svg |
85 |
| X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -4.632e+00 | 0.0417 | 9.0 | 1.12% | 209.3 | 0.44% | motif file (matrix) |
svg |
86 |
| Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -4.613e+00 | 0.0420 | 14.0 | 1.75% | 406.2 | 0.85% | motif file (matrix) |
svg |