Information for 1-BSCCTTTGTY (Motif 3)

A C G T A T G C A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T
Reverse Opposite:
T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G T A C G T G C A
p-value:1e-39
log p-value:-9.060e+01
Information Content per bp:1.714
Number of Target Sequences with motif197.0
Percentage of Target Sequences with motif24.62%
Number of Background Sequences with motif4210.0
Percentage of Background Sequences with motif8.82%
Average Position of motif in Targets49.7 +/- 25.9bp
Average Position of motif in Background50.3 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:0.96
Offset:2
Orientation:forward strand
Alignment:BSCCTTTGTY
--CCWTTGTY
 A C G T A T G C A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T
A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:2
Score:0.96
Offset:2
Orientation:forward strand
Alignment:BSCCTTTGTY--
--CCWTTGTYYB
 A C G T A T G C A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A C G T A C G T
A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.95
Offset:2
Orientation:forward strand
Alignment:BSCCTTTGTY
--CCTTTGTT
 A C G T A T G C A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.93
Offset:2
Orientation:forward strand
Alignment:BSCCTTTGTY--
--CCTTTGTTTT
 A C G T A T G C A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A C G T A C G T
A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:5
Score:0.93
Offset:2
Orientation:forward strand
Alignment:BSCCTTTGTY--
--YCTTTGTTCC
 A C G T A T G C A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A C G T A C G T
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

SOX10/MA0442.1/Jaspar

Match Rank:6
Score:0.92
Offset:3
Orientation:forward strand
Alignment:BSCCTTTGTY
---CTTTGT-
 A C G T A T G C A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T
A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.92
Offset:1
Orientation:forward strand
Alignment:BSCCTTTGTY-
-NCCATTGTTC
 A C G T A T G C A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A C G T
A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.91
Offset:2
Orientation:forward strand
Alignment:BSCCTTTGTY--
--CCATTGTTNY
 A C G T A T G C A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A C G T A C G T
A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--BSCCTTTGTY-----
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T A T G C A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A C G T A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.91
Offset:2
Orientation:forward strand
Alignment:BSCCTTTGTY--
--CCATTGTTTT
 A C G T A T G C A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A C G T A C G T
A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T