Information for 18-GAGGCTTCAA (Motif 26)

A C T G C G T A A C T G A C T G A G T C A C G T A C G T A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G C G T A C G T A A C T G A G T C A G T C A C G T A G T C
p-value:1e-4
log p-value:-1.131e+01
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif17.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets44.4 +/- 23.8bp
Average Position of motif in Background44.9 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GAGGCTTCAA-
-CGGTTTCAAA
 A C T G C G T A A C T G A C T G A G T C A C G T A C G T A G T C C G T A C G T A A C G T
A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GAGGCTTCAA
---GCTTCC-
 A C T G C G T A A C T G A C T G A G T C A C G T A C G T A G T C C G T A C G T A
A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GAGGCTTCAA----
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T A C T G C G T A A C T G A C T G A G T C A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

PB0118.1_Esrra_2/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GAGGCTTCAA----
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C T G C G T A A C T G A C T G A G T C A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

Nr2e3/MA0164.1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GAGGCTTCAA
-AAGCTTG--
 A C T G C G T A A C T G A C T G A G T C A C G T A C G T A G T C C G T A C G T A
A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAGGCTTCAA---
ARGAGGMCAAAATGW
 A C G T A C G T A C T G C G T A A C T G A C T G A G T C A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C G T
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAGGCTTCAA
CNAGGCCT---
 A C G T A C T G C G T A A C T G A C T G A G T C A C G T A C G T A G T C C G T A C G T A
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GAGGCTTCAA-
-TGGTTTCAGT
 A C T G C G T A A C T G A C T G A G T C A C G T A C G T A G T C C G T A C G T A A C G T
A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----GAGGCTTCAA-----
TTCTAGAANNTTCCAGAANN
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C T G A G T C A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A G C A G C T T C G A C T A G G T C A C T G A A T C G T A G C G A C T C A G T A T G C A G T C C T G A A C T G T C G A T C G A A T C G T A C G

PB0197.1_Zfp105_2/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GAGGCTTCAA--------
-ATGGTTCAATAATTTTG
 A C T G C G T A A C T G A C T G A G T C A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G A G C T C A T G T A C G A C G T A G C T T G A C T G C A T G C A A G C T T C G A C G T A A G C T C A G T A G C T A C G T C T A G