Information for 10-TTTAAATGRV (Motif 14)

A G C T A C G T G A C T C T G A G T C A C T G A C G A T C T A G T C A G T C G A
Reverse Opposite:
A G C T A G T C G A T C G C T A G A C T A C G T A G C T C T G A T G C A C T G A
p-value:1e-11
log p-value:-2.751e+01
Information Content per bp:1.635
Number of Target Sequences with motif82.0
Percentage of Target Sequences with motif10.25%
Number of Background Sequences with motif2062.5
Percentage of Background Sequences with motif4.32%
Average Position of motif in Targets54.0 +/- 25.7bp
Average Position of motif in Background48.5 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-TTTAAATGRV
ATTTGAATT--
 A C G T A G C T A C G T G A C T C T G A G T C A C T G A C G A T C T A G T C A G T C G A
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TTTAAATGRV
ATTTGCATA--
 A C G T A G C T A C G T G A C T C T G A G T C A C T G A C G A T C T A G T C A G T C G A
G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TTTAAATGRV
BTVATTWGCATA--
 A C G T A C G T A C G T A C G T A G C T A C G T G A C T C T G A G T C A C T G A C G A T C T A G T C A G T C G A
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:4
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----TTTAAATGRV
CGGTTTCAAA----
 A C G T A C G T A C G T A C G T A G C T A C G T G A C T C T G A G T C A C T G A C G A T C T A G T C A G T C G A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TTTAAATGRV
CCAAAAATAG-
 A C G T A G C T A C G T G A C T C T G A G T C A C T G A C G A T C T A G T C A G T C G A
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TTTAAATGRV
DCYAAAAATAGM
 A C G T A C G T A G C T A C G T G A C T C T G A G T C A C T G A C G A T C T A G T C A G T C G A
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C

PH0114.1_Nkx2-5/Jaspar

Match Rank:7
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TTTAAATGRV---
AAATTCAAGTGGNTTN
 A C G T A C G T A C G T A G C T A C G T G A C T C T G A G T C A C T G A C G A T C T A G T C A G T C G A A C G T A C G T A C G T
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

POU3F1/MA0786.1/Jaspar

Match Rank:8
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TTTAAATGRV
TAATTTGCATAA-
 A C G T A C G T A C G T A G C T A C G T G A C T C T G A G T C A C T G A C G A T C T A G T C A G T C G A
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TTTAAATGRV
CTCATTTGCATW--
 A C G T A C G T A C G T A C G T A G C T A C G T G A C T C T G A G T C A C T G A C G A T C T A G T C A G T C G A
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:10
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TTTAAATGRV
KCCAAAAATAGC
 A C G T A C G T A G C T A C G T G A C T C T G A G T C A C T G A C G A T C T A G T C A G T C G A
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C