Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-58 | -1.356e+02 | 0.0000 | 62.0 | 8.15% | 185.4 | 0.38% | motif file (matrix) |
svg |
2 |
| OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-58 | -1.342e+02 | 0.0000 | 72.0 | 9.46% | 302.9 | 0.63% | motif file (matrix) |
svg |
3 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-55 | -1.272e+02 | 0.0000 | 72.0 | 9.46% | 335.6 | 0.70% | motif file (matrix) |
svg |
4 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-37 | -8.623e+01 | 0.0000 | 109.0 | 14.32% | 1551.1 | 3.22% | motif file (matrix) |
svg |
5 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-36 | -8.426e+01 | 0.0000 | 181.0 | 23.78% | 4064.1 | 8.43% | motif file (matrix) |
svg |
6 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-29 | -6.894e+01 | 0.0000 | 99.0 | 13.01% | 1584.4 | 3.29% | motif file (matrix) |
svg |
7 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-27 | -6.322e+01 | 0.0000 | 105.0 | 13.80% | 1905.0 | 3.95% | motif file (matrix) |
svg |
8 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-26 | -6.101e+01 | 0.0000 | 109.0 | 14.32% | 2095.6 | 4.35% | motif file (matrix) |
svg |
9 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-26 | -6.029e+01 | 0.0000 | 153.0 | 20.11% | 3773.6 | 7.83% | motif file (matrix) |
svg |
10 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-25 | -5.783e+01 | 0.0000 | 152.0 | 19.97% | 3825.2 | 7.94% | motif file (matrix) |
svg |
11 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-22 | -5.271e+01 | 0.0000 | 93.0 | 12.22% | 1765.8 | 3.66% | motif file (matrix) |
svg |
12 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-22 | -5.194e+01 | 0.0000 | 79.0 | 10.38% | 1326.4 | 2.75% | motif file (matrix) |
svg |
13 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-21 | -5.061e+01 | 0.0000 | 105.0 | 13.80% | 2248.3 | 4.67% | motif file (matrix) |
svg |
14 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-20 | -4.767e+01 | 0.0000 | 63.0 | 8.28% | 931.5 | 1.93% | motif file (matrix) |
svg |
15 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-20 | -4.672e+01 | 0.0000 | 103.0 | 13.53% | 2297.7 | 4.77% | motif file (matrix) |
svg |
16 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-19 | -4.542e+01 | 0.0000 | 83.0 | 10.91% | 1617.9 | 3.36% | motif file (matrix) |
svg |
17 |
| REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-18 | -4.342e+01 | 0.0000 | 13.0 | 1.71% | 13.1 | 0.03% | motif file (matrix) |
svg |
18 |
| Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer | 1e-17 | -3.993e+01 | 0.0000 | 47.0 | 6.18% | 622.6 | 1.29% | motif file (matrix) |
svg |
19 |
| Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer | 1e-16 | -3.766e+01 | 0.0000 | 55.0 | 7.23% | 894.7 | 1.86% | motif file (matrix) |
svg |
20 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-14 | -3.405e+01 | 0.0000 | 79.0 | 10.38% | 1819.8 | 3.78% | motif file (matrix) |
svg |
21 |
| GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer | 1e-12 | -2.825e+01 | 0.0000 | 40.0 | 5.26% | 639.2 | 1.33% | motif file (matrix) |
svg |
22 |
| Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-10 | -2.396e+01 | 0.0000 | 33.0 | 4.34% | 519.8 | 1.08% | motif file (matrix) |
svg |
23 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-9 | -2.271e+01 | 0.0000 | 124.0 | 16.29% | 4352.4 | 9.03% | motif file (matrix) |
svg |
24 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-9 | -2.266e+01 | 0.0000 | 174.0 | 22.86% | 6869.2 | 14.26% | motif file (matrix) |
svg |
25 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-9 | -2.207e+01 | 0.0000 | 140.0 | 18.40% | 5185.7 | 10.76% | motif file (matrix) |
svg |
26 |
| Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer | 1e-8 | -2.023e+01 | 0.0000 | 28.0 | 3.68% | 447.4 | 0.93% | motif file (matrix) |
svg |
27 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-8 | -1.990e+01 | 0.0000 | 89.0 | 11.70% | 2890.0 | 6.00% | motif file (matrix) |
svg |
28 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-8 | -1.931e+01 | 0.0000 | 85.0 | 11.17% | 2742.8 | 5.69% | motif file (matrix) |
svg |
29 |
| Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer | 1e-7 | -1.829e+01 | 0.0000 | 61.0 | 8.02% | 1740.1 | 3.61% | motif file (matrix) |
svg |
30 |
| GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-7 | -1.746e+01 | 0.0000 | 78.0 | 10.25% | 2536.1 | 5.26% | motif file (matrix) |
svg |
31 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-6 | -1.545e+01 | 0.0000 | 62.0 | 8.15% | 1934.2 | 4.01% | motif file (matrix) |
svg |
32 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-6 | -1.411e+01 | 0.0000 | 245.0 | 32.19% | 11761.5 | 24.41% | motif file (matrix) |
svg |
33 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-5 | -1.359e+01 | 0.0000 | 25.0 | 3.29% | 515.0 | 1.07% | motif file (matrix) |
svg |
34 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-5 | -1.309e+01 | 0.0000 | 37.0 | 4.86% | 987.8 | 2.05% | motif file (matrix) |
svg |
35 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-5 | -1.243e+01 | 0.0000 | 42.0 | 5.52% | 1226.3 | 2.54% | motif file (matrix) |
svg |
36 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.218e+01 | 0.0001 | 19.0 | 2.50% | 350.1 | 0.73% | motif file (matrix) |
svg |
37 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-5 | -1.194e+01 | 0.0001 | 32.0 | 4.20% | 835.8 | 1.73% | motif file (matrix) |
svg |
38 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-4 | -1.106e+01 | 0.0002 | 39.0 | 5.12% | 1169.0 | 2.43% | motif file (matrix) |
svg |
39 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-4 | -1.084e+01 | 0.0002 | 282.0 | 37.06% | 14470.8 | 30.03% | motif file (matrix) |
svg |
40 |
| E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-4 | -9.713e+00 | 0.0006 | 93.0 | 12.22% | 3909.5 | 8.11% | motif file (matrix) |
svg |
41 |
| MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-4 | -9.653e+00 | 0.0006 | 54.0 | 7.10% | 1947.3 | 4.04% | motif file (matrix) |
svg |
42 |
| NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer | 1e-4 | -9.310e+00 | 0.0008 | 14.0 | 1.84% | 259.4 | 0.54% | motif file (matrix) |
svg |
43 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-4 | -9.281e+00 | 0.0008 | 33.0 | 4.34% | 1005.6 | 2.09% | motif file (matrix) |
svg |
44 |
| RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer | 1e-4 | -9.237e+00 | 0.0008 | 43.0 | 5.65% | 1459.0 | 3.03% | motif file (matrix) |
svg |
45 |
| Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer | 1e-3 | -9.142e+00 | 0.0009 | 239.0 | 31.41% | 12226.7 | 25.38% | motif file (matrix) |
svg |
46 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-3 | -9.055e+00 | 0.0009 | 42.0 | 5.52% | 1424.5 | 2.96% | motif file (matrix) |
svg |
47 |
| Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer | 1e-3 | -8.131e+00 | 0.0023 | 32.0 | 4.20% | 1027.4 | 2.13% | motif file (matrix) |
svg |
48 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-3 | -8.075e+00 | 0.0024 | 117.0 | 15.37% | 5407.5 | 11.22% | motif file (matrix) |
svg |
49 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-3 | -7.905e+00 | 0.0027 | 44.0 | 5.78% | 1602.1 | 3.32% | motif file (matrix) |
svg |
50 |
| RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer | 1e-3 | -7.806e+00 | 0.0030 | 41.0 | 5.39% | 1466.7 | 3.04% | motif file (matrix) |
svg |
51 |
| RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer | 1e-3 | -7.783e+00 | 0.0030 | 45.0 | 5.91% | 1660.5 | 3.45% | motif file (matrix) |
svg |
52 |
| E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-3 | -7.725e+00 | 0.0031 | 95.0 | 12.48% | 4253.8 | 8.83% | motif file (matrix) |
svg |
53 |
| RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-3 | -7.230e+00 | 0.0050 | 8.0 | 1.05% | 119.0 | 0.25% | motif file (matrix) |
svg |
54 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-3 | -6.957e+00 | 0.0064 | 53.0 | 6.96% | 2131.7 | 4.42% | motif file (matrix) |
svg |
55 |
| X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -6.837e+00 | 0.0071 | 10.0 | 1.31% | 190.3 | 0.39% | motif file (matrix) |
svg |
56 |
| Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-2 | -6.713e+00 | 0.0079 | 95.0 | 12.48% | 4392.4 | 9.12% | motif file (matrix) |
svg |
57 |
| Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer | 1e-2 | -6.465e+00 | 0.0099 | 36.0 | 4.73% | 1330.7 | 2.76% | motif file (matrix) |
svg |
58 |
| ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer | 1e-2 | -6.424e+00 | 0.0102 | 102.0 | 13.40% | 4822.2 | 10.01% | motif file (matrix) |
svg |
59 |
| Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer | 1e-2 | -6.347e+00 | 0.0108 | 43.0 | 5.65% | 1685.4 | 3.50% | motif file (matrix) |
svg |
60 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.211e+00 | 0.0122 | 66.0 | 8.67% | 2890.5 | 6.00% | motif file (matrix) |
svg |
61 |
| Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-2 | -6.111e+00 | 0.0132 | 110.0 | 14.45% | 5320.1 | 11.04% | motif file (matrix) |
svg |
62 |
| ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.993e+00 | 0.0147 | 56.0 | 7.36% | 2388.2 | 4.96% | motif file (matrix) |
svg |
63 |
| Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -5.985e+00 | 0.0147 | 14.0 | 1.84% | 366.5 | 0.76% | motif file (matrix) |
svg |
64 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-2 | -5.958e+00 | 0.0147 | 25.0 | 3.29% | 846.5 | 1.76% | motif file (matrix) |
svg |
65 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-2 | -5.831e+00 | 0.0164 | 45.0 | 5.91% | 1837.0 | 3.81% | motif file (matrix) |
svg |
66 |
| Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-2 | -5.719e+00 | 0.0181 | 8.0 | 1.05% | 152.4 | 0.32% | motif file (matrix) |
svg |
67 |
| Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.366e+00 | 0.0254 | 19.0 | 2.50% | 610.3 | 1.27% | motif file (matrix) |
svg |
68 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-2 | -5.317e+00 | 0.0263 | 149.0 | 19.58% | 7710.7 | 16.00% | motif file (matrix) |
svg |
69 |
| NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer | 1e-2 | -5.159e+00 | 0.0303 | 33.0 | 4.34% | 1294.4 | 2.69% | motif file (matrix) |
svg |
70 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-2 | -5.149e+00 | 0.0303 | 18.0 | 2.37% | 578.9 | 1.20% | motif file (matrix) |
svg |
71 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.103e+00 | 0.0312 | 30.0 | 3.94% | 1150.8 | 2.39% | motif file (matrix) |
svg |
72 |
| CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-2 | -4.977e+00 | 0.0349 | 112.0 | 14.72% | 5638.6 | 11.70% | motif file (matrix) |
svg |
73 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -4.905e+00 | 0.0370 | 59.0 | 7.75% | 2685.0 | 5.57% | motif file (matrix) |
svg |
74 |
| Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.875e+00 | 0.0375 | 30.0 | 3.94% | 1170.6 | 2.43% | motif file (matrix) |
svg |
75 |
| Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer | 1e-2 | -4.860e+00 | 0.0376 | 33.0 | 4.34% | 1322.7 | 2.75% | motif file (matrix) |
svg |
76 |
| E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.810e+00 | 0.0390 | 21.0 | 2.76% | 738.1 | 1.53% | motif file (matrix) |
svg |
77 |
| EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-2 | -4.658e+00 | 0.0448 | 64.0 | 8.41% | 2992.7 | 6.21% | motif file (matrix) |
svg |