Information for 21-CTAATCACTT (Motif 40)

T A G C C G A T G T C A C G T A A C G T A T G C C G T A A G T C A G C T C G A T
Reverse Opposite:
C G T A C T G A A C T G A C G T A T C G G T C A G C A T A C G T C G T A A T C G
p-value:1e-5
log p-value:-1.281e+01
Information Content per bp:1.754
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.97%
Number of Background Sequences with motif215.9
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets48.2 +/- 31.2bp
Average Position of motif in Background48.9 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CTAATCACTT-
-TAATCAATTA
 T A G C C G A T G T C A C G T A A C G T A T G C C G T A A G T C A G C T C G A T A C G T
A C G T C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:2
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:CTAATCACTT--
--MRSCACTYAA
 T A G C C G A T G T C A C G T A A C G T A T G C C G T A A G T C A G C T C G A T A C G T A C G T
A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:3
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CTAATCACTT--
--AAGCACTTAA
 T A G C C G A T G T C A C G T A A C G T A T G C C G T A A G T C A G C T C G A T A C G T A C G T
A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

PH0004.1_Nkx3-2/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CTAATCACTT------
CATAACCACTTAACAAC
 A C G T T A G C C G A T G T C A C G T A A C G T A T G C C G T A A G T C A G C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

EVX2/MA0888.1/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CTAATCACTT
NNTAATTANN-
 A C G T T A G C C G A T G T C A C G T A A C G T A T G C C G T A A G T C A G C T C G A T
T A C G A T G C G A C T T C G A T G C A A G C T A C G T C T G A A T G C A T G C A C G T

EVX1/MA0887.1/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CTAATCACTT
GNTAATTANN-
 A C G T T A G C C G A T G T C A C G T A A C G T A T G C C G T A A G T C A G C T C G A T
A T C G T A G C G A C T C T G A T G C A A G C T A G C T C T G A A T G C A G T C A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CTAATCACTT---
---ACCACTTGAA
 T A G C C G A T G T C A C G T A A C G T A T G C C G T A A G T C A G C T C G A T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

NKX3-2/MA0122.2/Jaspar

Match Rank:8
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CTAATCACTT--
---ACCACTTAA
 T A G C C G A T G T C A C G T A A C G T A T G C C G T A A G T C A G C T C G A T A C G T A C G T
A C G T A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A

Gfi1/MA0038.1/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTAATCACTT
CAAATCACTG
 T A G C C G A T G T C A C G T A A C G T A T G C C G T A A G T C A G C T C G A T
A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

Nkx3-1/MA0124.2/Jaspar

Match Rank:10
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CTAATCACTT--
---ACCACTTAA
 T A G C C G A T G T C A C G T A A C G T A T G C C G T A A G T C A G C T C G A T A C G T A C G T
A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A