Information for 8-CTTGGCTGCCGCT (Motif 7)

A G T C A C G T A G C T A C T G A C T G A G T C A C G T A C T G A G T C A G T C A C T G A G T C A C G T
Reverse Opposite:
C G T A A C T G T A G C A C T G A C T G G T A C C G T A A C T G A G T C A G T C C T G A C G T A A C T G
p-value:1e-10
log p-value:-2.481e+01
Information Content per bp:1.914
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.2 +/- 20.5bp
Average Position of motif in Background82.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTTGGCTGCCGCT
-TWGTCTGV----
 A G T C A C G T A G C T A C T G A C T G A G T C A C G T A C T G A G T C A G T C A C T G A G T C A C G T
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTTGGCTGCCGCT
-TTGGCA------
 A G T C A C G T A G C T A C T G A C T G A G T C A C G T A C T G A G T C A G T C A C T G A G T C A C G T
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTTGGCTGCCGCT
NTTGGCANN----
 A G T C A C G T A G C T A C T G A C T G A G T C A C G T A C T G A G T C A G T C A C T G A G T C A C G T
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CTTGGCTGCCGCT
NNACTTGCCTT-----
 A C G T A C G T A C G T A G T C A C G T A G C T A C T G A C T G A G T C A C G T A C T G A G T C A G T C A C T G A G T C A C G T
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:5
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------CTTGGCTGCCGCT
GTCACGCTTGGCTGCNCNN
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G C T A C T G A C T G A G T C A C G T A C T G A G T C A G T C A C T G A G T C A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTTGGCTGCCGCT-
--TGTCTGDCACCT
 A G T C A C G T A G C T A C T G A C T G A G T C A C G T A C T G A G T C A G T C A C T G A G T C A C G T A C G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:7
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CTTGGCTGCCGCT
GTCATGCHTGRCTGS----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G C T A C T G A C T G A G T C A C G T A C T G A G T C A G T C A C T G A G T C A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CTTGGCTGCCGCT
---NGCTN-----
 A G T C A C G T A G C T A C T G A C T G A G T C A C G T A C T G A G T C A G T C A C T G A G T C A C G T
A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.54
Offset:-7
Orientation:reverse strand
Alignment:-------CTTGGCTGCCGCT
NGTCACGCTTGGCTGC----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G C T A C T G A C T G A G T C A C G T A C T G A G T C A G T C A C T G A G T C A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C A C G T A C G T A C G T A C G T

SPIB/MA0081.1/Jaspar

Match Rank:10
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:CTTGGCTGCCGCT
------TTCCTCT
 A G T C A C G T A G C T A C T G A C T G A G T C A C G T A C T G A G T C A G T C A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G A T G A T C A G T C A C G T A T G C C G A T