Information for 8-ARCAAGGRAC (Motif 8)

C G T A C T A G G T A C T G C A C T G A C A T G A C T G C T A G C G T A G T A C
Reverse Opposite:
A C T G C G A T A G T C A G T C G T A C A G C T A C G T A C T G A G T C G C A T
p-value:1e-11
log p-value:-2.702e+01
Information Content per bp:1.769
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.57%
Number of Background Sequences with motif339.0
Percentage of Background Sequences with motif0.72%
Average Position of motif in Targets48.3 +/- 27.0bp
Average Position of motif in Background47.5 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0061.1_Sox11_1/Jaspar

Match Rank:1
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----ARCAAGGRAC--
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C G T C G T A C T A G G T A C T G C A C T G A C A T G A C T G C T A G C G T A G T A C A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----ARCAAGGRAC--
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C G T C G T A C T A G G T A C T G C A C T G A C A T G A C T G C T A G C G T A G T A C A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ARCAAGGRAC
GGAACAAAGR--
 A C G T A C G T C G T A C T A G G T A C T G C A C T G A C A T G A C T G C T A G C G T A G T A C
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ARCAAGGRAC
AACAAAGG--
 C G T A C T A G G T A C T G C A C T G A C A T G A C T G C T A G C G T A G T A C
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.64
Offset:2
Orientation:forward strand
Alignment:ARCAAGGRAC--
--CCAGGAACAG
 C G T A C T A G G T A C T G C A C T G A C A T G A C T G C T A G C G T A G T A C A C G T A C G T
A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ARCAAGGRAC
VRRACAAWGG--
 A C G T A C G T C G T A C T A G G T A C T G C A C T G A C A T G A C T G C T A G C G T A G T A C
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-ARCAAGGRAC
GAACAATGGN-
 A C G T C G T A C T A G G T A C T G C A C T G A C A T G A C T G C T A G C G T A G T A C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--ARCAAGGRAC
VRAACAATGG--
 A C G T A C G T C G T A C T A G G T A C T G C A C T G A C A T G A C T G C T A G C G T A G T A C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ARCAAGGRAC
AAAACAATGG--
 A C G T A C G T C G T A C T A G G T A C T G C A C T G A C A T G A C T G C T A G C G T A G T A C
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ARCAAGGRAC--
AATGAACAATGGAATT
 A C G T A C G T A C G T A C G T C G T A C T A G G T A C T G C A C T G A C A T G A C T G C T A G C G T A G T A C A C G T A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T