Information for 9-TTTACGGCCG (Motif 11)

A C G T A G C T A C G T T C G A A G T C A C T G A C T G A G T C A G T C A C T G
Reverse Opposite:
A G T C T A C G A C T G A G T C G T A C C T A G A G C T C G T A C T G A C G T A
p-value:1e-10
log p-value:-2.319e+01
Information Content per bp:1.857
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif12.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets49.5 +/- 25.6bp
Average Position of motif in Background48.3 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---TTTACGGCCG
DGWTTTATGRCN-
 A C G T A C G T A C G T A C G T A G C T A C G T T C G A A G T C A C T G A C T G A G T C A G T C A C T G
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T

HOXC12/MA0906.1/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TTTACGGCCG
NTTTTACGACC-
 A C G T A C G T A C G T A G C T A C G T T C G A A G T C A C T G A C T G A G T C A G T C A C T G
C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C A C G T

PH0077.1_Hoxd12/Jaspar

Match Rank:3
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----TTTACGGCCG--
NNNATTTTACGACNNTN
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T T C G A A G T C A C T G A C T G A G T C A G T C A C T G A C G T A C G T
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

PH0056.1_Hoxa9/Jaspar

Match Rank:4
Score:0.70
Offset:-6
Orientation:reverse strand
Alignment:------TTTACGGCCG-
ANTAATTTTATGGCCGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T T C G A A G T C A C T G A C T G A G T C A G T C A C T G A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

PH0067.1_Hoxc12/Jaspar

Match Rank:5
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----TTTACGGCCG--
GNNNTTTTACGACCTNA
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T T C G A A G T C A C T G A C T G A G T C A G T C A C T G A C G T A C G T
C T A G G C T A T C G A C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C A G C T C G T A C T G A

PH0065.1_Hoxc10/Jaspar

Match Rank:6
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TTTACGGCCG--
ANNTTTTACGACNTNN
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T T C G A A G T C A C T G A C T G A G T C A G T C A C T G A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

HOXD12/MA0873.1/Jaspar

Match Rank:7
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TTTACGGCCG
NTTTTACGACT-
 A C G T A C G T A C G T A G C T A C G T T C G A A G T C A C T G A C T G A G T C A G T C A C T G
C A G T C G A T G C A T A G C T G C A T C T G A A G T C A T C G T C G A A G T C A G C T A C G T

HOXC11/MA0651.1/Jaspar

Match Rank:8
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TTTACGGCCG
NTTTTACGACC-
 A C G T A C G T A C G T A G C T A C G T T C G A A G T C A C T G A C T G A G T C A G T C A C T G
C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C A C G T

PH0076.1_Hoxd11/Jaspar

Match Rank:9
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----TTTACGGCCG--
ANNATTTTACGACNTNA
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T T C G A A G T C A C T G A C T G A G T C A G T C A C T G A C G T A C G T
G T C A C T A G C T A G C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T G A

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTTACGGCCG
TTTTATGGCTN
 A C G T A C G T A G C T A C G T T C G A A G T C A C T G A C T G A G T C A G T C A C T G
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T