Information for 2-TTGAATRACAAAG (Motif 2)

A C G T A C G T C T A G C G T A C G T A A C G T T C A G G T C A A G T C C G T A C T G A C G T A C T A G
Reverse Opposite:
A G T C C G A T A G C T A C G T C T A G A C G T A G T C G T C A A C G T A C G T A G T C G T C A T C G A
p-value:1e-18
log p-value:-4.267e+01
Information Content per bp:1.811
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.3 +/- 22.9bp
Average Position of motif in Background73.5 +/- 15.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--TTGAATRACAAAG
ATTTGCATAACAAAG
 A C G T A C G T A C G T A C G T C T A G C G T A C G T A A C G T T C A G G T C A A G T C C G T A C T G A C G T A C T A G
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--TTGAATRACAAAG
ATTTGCATAACAATG
 A C G T A C G T A C G T A C G T C T A G C G T A C G T A A C G T T C A G G T C A A G T C C G T A C T G A C G T A C T A G
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

PB0119.1_Foxa2_2/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TTGAATRACAAAG--
AAAAATAACAAACGG
 A C G T A C G T C T A G C G T A C G T A A C G T T C A G G T C A A G T C C G T A C T G A C G T A C T A G A C G T A C G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TTGAATRACAAAG-----
-ATAAGAACAAAGGACTA
 A C G T A C G T C T A G C G T A C G T A A C G T T C A G G T C A A G T C C G T A C T G A C G T A C T A G A C G T A C G T A C G T A C G T A C G T
A C G T G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0071.1_Sox4_1/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TTGAATRACAAAG-----
-AGAAGAACAAAGGACTA
 A C G T A C G T C T A G C G T A C G T A A C G T T C A G G T C A A G T C C G T A C T G A C G T A C T A G A C G T A C G T A C G T A C G T A C G T
A C G T G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:TTGAATRACAAAG-
----AAAACAAAGG
 A C G T A C G T C T A G C G T A C G T A A C G T T C A G G T C A A G T C C G T A C T G A C G T A C T A G A C G T
A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

SOX10/MA0442.1/Jaspar

Match Rank:7
Score:0.65
Offset:7
Orientation:reverse strand
Alignment:TTGAATRACAAAG
-------ACAAAG
 A C G T A C G T C T A G C G T A C G T A A C G T T C A G G T C A A G T C C G T A C T G A C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:TTGAATRACAAAG-
----VRRACAAWGG
 A C G T A C G T C T A G C G T A C G T A A C G T T C A G G T C A A G T C C G T A C T G A C G T A C T A G A C G T
A C G T A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:TTGAATRACAAAG-
------RACAAWGG
 A C G T A C G T C T A G C G T A C G T A A C G T T C A G G T C A A G T C C G T A C T G A C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTGAATRACAAAG
BTGABTGACAGS-
 A C G T A C G T C T A G C G T A C G T A A C G T T C A G G T C A A G T C C G T A C T G A C G T A C T A G
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T