Information for 6-CAGGCTGRCAGCCWGC (Motif 6)

A G T C C G T A A C T G A C T G A G T C C G A T A C T G T C A G G T A C G T C A C A T G A G T C A T G C C G T A T C A G A T G C
Reverse Opposite:
A T C G A G T C C G A T A T C G A C T G G A T C A C G T A C T G A G T C G T A C C G T A A C T G A G T C A G T C C G A T T C A G
p-value:1e-11
log p-value:-2.621e+01
Information Content per bp:1.764
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.4 +/- 30.3bp
Average Position of motif in Background60.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CAGGCTGRCAGCCWGC
CTGGCAGNCTGCCA--
 A G T C C G T A A C T G A C T G A G T C C G A T A C T G T C A G G T A C G T C A C A T G A G T C A T G C C G T A T C A G A T G C
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CAGGCTGRCAGCCWGC
TTGGCANNNTGCCAAG
 A G T C C G T A A C T G A C T G A G T C C G A T A C T G T C A G G T A C G T C A C A T G A G T C A T G C C G T A T C A G A T G C
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CAGGCTGRCAGCCWGC
--VGCTGWCAVB----
 A G T C C G T A A C T G A C T G A G T C C G A T A C T G T C A G G T A C G T C A C A T G A G T C A T G C C G T A T C A G A T G C
A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CAGGCTGRCAGCCWGC
NGTAGGTTGGCATNNN--
 A C G T A C G T A G T C C G T A A C T G A C T G A G T C C G A T A C T G T C A G G T A C G T C A C A T G A G T C A T G C C G T A T C A G A T G C
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCTGRCAGCCWGC---
YCAGGCWCAGTACCAGGCTC
 A C G T A G T C C G T A A C T G A C T G A G T C C G A T A C T G T C A G G T A C G T C A C A T G A G T C A T G C C G T A T C A G A T G C A C G T A C G T A C G T
A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CAGGCTGRCAGCCWGC
CTGTCTGTCACCT---
 A G T C C G T A A C T G A C T G A G T C C G A T A C T G T C A G G T A C G T C A C A T G A G T C A T G C C G T A T C A G A T G C
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CAGGCTGRCAGCCWGC
TWGTCTGV--------
 A G T C C G T A A C T G A C T G A G T C C G A T A C T G T C A G G T A C G T C A C A T G A G T C A T G C C G T A T C A G A T G C
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Spz1/MA0111.1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CAGGCTGRCAGCCWGC
-AGGGTAACAGC----
 A G T C C G T A A C T G A C T G A G T C C G A T A C T G T C A G G T A C G T C A C A T G A G T C A T G C C G T A T C A G A T G C
A C G T C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CAGGCTGRCAGCCWGC
--NGCTN---------
 A G T C C G T A A C T G A C T G A G T C C G A T A C T G T C A G G T A C G T C A C A T G A G T C A T G C C G T A T C A G A T G C
A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CAGGCTGRCAGCCWGC
--GSCTGTCACTCA--
 A G T C C G T A A C T G A C T G A G T C C G A T A C T G T C A G G T A C G T C A C A T G A G T C A T G C C G T A T C A G A T G C
A C G T A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T