Information for 12-CGTAGGCATV (Motif 25)

A G T C A T C G A G C T C G T A A C T G A C T G A G T C C G T A A C G T T G C A
Reverse Opposite:
A C G T C G T A A C G T A C T G A G T C A G T C A C G T C T G A A T G C A C T G
p-value:1e-6
log p-value:-1.553e+01
Information Content per bp:1.869
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif28.5
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets41.1 +/- 17.3bp
Average Position of motif in Background52.9 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CGTAGGCATV
-CNAGGCCT-
 A G T C A T C G A G C T C G T A A C T G A C T G A G T C C G T A A C G T T G C A
A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CGTAGGCATV
GGTTGGCAT-
 A G T C A T C G A G C T C G T A A C T G A C T G A G T C C G T A A C G T T G C A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CGTAGGCATV
NGTGGGCAT-
 A G T C A T C G A G C T C G T A A C T G A C T G A G T C C G T A A C G T T G C A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CGTAGGCATV
-CTAGGCCT-
 A G T C A T C G A G C T C G T A A C T G A C T G A G T C C G T A A C G T T G C A
A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CGTAGGCATV
AGCCTCAGGCA--
 A C G T A C G T A C G T A G T C A T C G A G C T C G T A A C T G A C T G A G T C C G T A A C G T T G C A
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CGTAGGCATV-
ATGCCCGGGCATGT
 A C G T A C G T A C G T A G T C A T C G A G C T C G T A A C T G A C T G A G T C C G T A A C G T T G C A A C G T
G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T

TFAP2A/MA0003.3/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CGTAGGCATV
CGCCTCAGGCA--
 A C G T A C G T A C G T A G T C A T C G A G C T C G T A A C T G A C T G A G T C C G T A A C G T T G C A
G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CGTAGGCATV
AGCCTCAGGCA--
 A C G T A C G T A C G T A G T C A T C G A G C T C G T A A C T G A C T G A G T C C G T A A C G T T G C A
G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CGTAGGCATV--
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A G T C A T C G A G C T C G T A A C T G A C T G A G T C C G T A A C G T T G C A A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Zfx/MA0146.2/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CGTAGGCATV
GGGGCCGAGGCCTG
 A C G T A C G T A C G T A C G T A G T C A T C G A G C T C G T A A C T G A C T G A G T C C G T A A C G T T G C A
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G