Information for 16-CATKTCAAAGAGC (Motif 19)

A G T C G T C A C G A T A C G T C G A T A T G C G T C A T C G A C G T A T A C G C G T A T A C G A T G C
Reverse Opposite:
A T C G A T G C G A C T A T G C G A C T A C G T C A G T T A C G G C T A T G C A G C T A C A G T A C T G
p-value:1e-8
log p-value:-1.972e+01
Information Content per bp:1.662
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.65%
Number of Background Sequences with motif64.9
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets55.5 +/- 21.8bp
Average Position of motif in Background48.5 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----CATKTCAAAGAGC
ATTTGCATAACAAAG---
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A C G A T A C G T C G A T A T G C G T C A T C G A C G T A T A C G C G T A T A C G A T G C
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G A C G T A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CATKTCAAAGAGC
-ACATCAAAGG--
 A G T C G T C A C G A T A C G T C G A T A T G C G T C A T C G A C G T A T A C G C G T A T A C G A T G C
A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CATKTCAAAGAGC
ATTTGCATAACAATG---
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A C G A T A C G T C G A T A T G C G T C A T C G A C G T A T A C G C G T A T A C G A T G C
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G A C G T A C G T A C G T

PH0085.1_Irx4/Jaspar

Match Rank:4
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------CATKTCAAAGAGC
AATATACATGTAAAACA--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T C A C G A T A C G T C G A T A T G C G T C A T C G A C G T A T A C G C G T A T A C G A T G C
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A A C G T A C G T

PH0086.1_Irx5/Jaspar

Match Rank:5
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------CATKTCAAAGAGC
AATATACATGTAAAATT--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T C A C G A T A C G T C G A T A T G C G T C A T C G A C G T A T A C G C G T A T A C G A T G C
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CATKTCAAAGAGC
-ACWTCAAAGG--
 A G T C G T C A C G A T A C G T C G A T A T G C G T C A T C G A C G T A T A C G C G T A T A C G A T G C
A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G A C G T A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CATKTCAAAGAGC
-ACATCAAAGGNA
 A G T C G T C A C G A T A C G T C G A T A T G C G T C A T C G A C G T A T A C G C G T A T A C G A T G C
A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

HNF4G/MA0484.1/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CATKTCAAAGAGC-
AGAGTCCAAAGTCCA
 A C G T A G T C G T C A C G A T A C G T C G A T A T G C G T C A T C G A C G T A T A C G C G T A T A C G A T G C A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

TCF7L2/MA0523.1/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CATKTCAAAGAGC
AAAGATCAAAGGAA
 A C G T A G T C G T C A C G A T A C G T C G A T A T G C G T C A T C G A C G T A T A C G C G T A T A C G A T G C
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CATKTCAAAGAGC-
CANAGNNCAAAGTCCA
 A C G T A C G T A G T C G T C A C G A T A C G T C G A T A T G C G T C A T C G A C G T A T A C G C G T A T A C G A T G C A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A