Information for 13-TRWGCTGTKACAG (Motif 12)

A C G T C T A G C G T A A C T G A G T C C G A T A C T G A C G T A C G T G T C A A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C G T G T C A C G T A A G T C C G T A A C T G A G T C C G A T G A C T G T C A
p-value:1e-9
log p-value:-2.268e+01
Information Content per bp:1.887
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets66.2 +/- 10.5bp
Average Position of motif in Background21.9 +/- 8.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rhox11/MA0629.1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TRWGCTGTKACAG--
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T C T A G C G T A A C T G A G T C C G A T A C T G A C G T A C G T G T C A A G T C C G T A A C T G A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TRWGCTGTKACAG--
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T C T A G C G T A A C T G A G T C C G A T A C T G A C G T A C G T G T C A A G T C C G T A A C T G A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0158.1_Rhox11_2/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TRWGCTGTKACAG--
AGGACGCTGTAAAGGGA
 A C G T A C G T A C G T C T A G C G T A A C T G A G T C C G A T A C T G A C G T A C G T G T C A A G T C C G T A A C T G A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TRWGCTGTKACAG
---GCTGTG----
 A C G T C T A G C G T A A C T G A G T C C G A T A C T G A C G T A C G T G T C A A G T C C G T A A C T G
A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.60
Offset:6
Orientation:forward strand
Alignment:TRWGCTGTKACAG-
------TTGACAGC
 A C G T C T A G C G T A A C T G A G T C C G A T A C T G A C G T A C G T G T C A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.60
Offset:6
Orientation:forward strand
Alignment:TRWGCTGTKACAG-
------TTGACAGG
 A C G T C T A G C G T A A C T G A G T C C G A T A C T G A C G T A C G T G T C A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TRWGCTGTKACAG-------
WNTGCTGASTCAGCANWTTY
 A C G T C T A G C G T A A C T G A G T C C G A T A C T G A C G T A C G T G T C A A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A G A C T C G A T A T C G G T A C G C A T C A T G C G T A T A C G G C A T G T A C C G T A C A T G A T G C G C T A C T A G G C A T G C A T G C A T G A C T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TRWGCTGTKACAG
-AAGGTGTKAA--
 A C G T C T A G C G T A A C T G A G T C C G A T A C T G A C G T A C G T G T C A A G T C C G T A A C T G
A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TRWGCTGTKACAG--
NNNCAGCTGTCAATATN
 A C G T A C G T A C G T C T A G C G T A A C T G A G T C C G A T A C T G A C G T A C G T G T C A A G T C C G T A A C T G A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:TRWGCTGTKACAG-
----CTGTTCCTGG
 A C G T C T A G C G T A A C T G A G T C C G A T A C T G A C G T A C G T G T C A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G