Information for 20-TTTTGAGATCCAA (Motif 28)

A C G T A C G T A C G T A C G T A C T G C G T A C T A G C G T A A C G T A T G C A G T C C G T A C G T A
Reverse Opposite:
A C G T C G A T A C T G A T C G C G T A A C G T A G T C A C G T A G T C C G T A C G T A C G T A C G T A
p-value:1e-8
log p-value:-2.022e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.2 +/- 30.7bp
Average Position of motif in Background14.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TTTTGAGATCCAA--
CTTTGTTATGCAAAT
 A C G T A C G T A C G T A C G T A C T G C G T A C T A G C G T A A C G T A T G C A G T C C G T A C G T A A C G T A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTTTGAGATCCAA--
CATTGTTATGCAAAT
 A C G T A C G T A C G T A C G T A C T G C G T A C T A G C G T A A C G T A T G C A G T C C G T A C G T A A C G T A C G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TTTTGAGATCCAA
-TTTGAAACCG--
 A C G T A C G T A C G T A C G T A C T G C G T A C T A G C G T A A C G T A T G C A G T C C G T A C G T A
A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTTTGAGATCCAA
CCTTTGATGT----
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C T A G C G T A A C G T A T G C A G T C C G T A C G T A
A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T A C G T A C G T A C G T A C G T

PH0166.1_Six6_2/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTTTGAGATCCAA--
AATNTTGATACCCTATN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C T A G C G T A A C G T A T G C A G T C C G T A C G T A A C G T A C G T
T G C A C T G A C G A T C T G A C G A T C G A T C A T G C G T A G A C T G T C A A G T C G A T C G A T C A G C T G C T A G C A T G A C T

CEBPA/MA0102.3/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTTTGAGATCCAA
NATTGTGCAAT----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C T A G C G T A A C G T A T G C A G T C C G T A C G T A
C A G T T C G A A C G T A C G T C T A G A C G T A C T G G T A C C G T A C G T A A G C T A C G T A C G T A C G T A C G T

PH0165.1_Six6_1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTTTGAGATCCAA--
ANANNTGATACCCTATN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C T A G C G T A A C G T A T G C A G T C C G T A C G T A A C G T A C G T
T G C A C G A T C G T A G C T A C A G T G C A T C A T G C G T A A G C T G T C A A G T C T A G C A G T C A G C T G C T A C G A T G A C T

PB0059.1_Six6_1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TTTTGAGATCCAA--
ANANNTGATACCCNATN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C T A G C G T A A C G T A T G C A G T C C G T A C G T A A C G T A C G T
C T G A C G A T C G T A G C A T C T G A G A C T C T A G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A C T

Six3/MA0631.1/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TTTTGAGATCCAA--
ANANGTGATACCCTATN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C T A G C G T A A C G T A T G C A G T C C G T A C G T A A C G T A C G T
T G C A C G A T G C A T C G T A C T A G A C G T C A T G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A T C

PH0163.1_Six3/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TTTTGAGATCCAA--
ANANGTGATACCCTATN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C T A G C G T A A C G T A T G C A G T C C G T A C G T A A C G T A C G T
T G C A C G A T G C A T C G T A C T A G A C G T C A T G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A T C