Information for 2-CCCGCCTCGGGGA (Motif 3)

A G T C A T G C A G T C A C T G A G T C A G T C A G C T A T G C A C T G A C T G A C T G A T C G C G T A
Reverse Opposite:
C G A T A T G C A G T C A G T C A G T C A T C G C T G A A C T G A C T G G T A C C T A G A T C G A C T G
p-value:1e-12
log p-value:-2.784e+01
Information Content per bp:1.869
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif22.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets49.2 +/- 26.1bp
Average Position of motif in Background47.3 +/- 22.2bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0101.1_Zic1_1/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CCCGCCTCGGGGA-
CCCCCCCGGGGGNN
 A G T C A T G C A G T C A C T G A G T C A G T C A G C T A T G C A C T G A C T G A C T G A T C G C G T A A C G T
T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

PB0087.1_Tcfap2c_1/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CCCGCCTCGGGGA--
NTCGCCTCAGGCAAT
 A G T C A T G C A G T C A C T G A G T C A G T C A G C T A T G C A C T G A C T G A C T G A T C G C G T A A C G T A C G T
G C A T C G A T G A T C A T C G G T A C A G T C A G C T T A G C T C G A C T A G A C T G T A G C C T G A C G T A C G A T

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CCCGCCTCGGGGA--
NTCCCCTCAGGGANT
 A G T C A T G C A G T C A C T G A G T C A G T C A G C T A T G C A C T G A C T G A C T G A T C G C G T A A C G T A C G T
G A C T C G A T G A T C A T G C G T A C A G T C A G C T T A G C T C G A C T A G A C T G T A C G C G T A G C T A G C A T

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:4
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CCCGCCTCGGGGA--
---SCCTSAGGSCAW
 A G T C A T G C A G T C A C T G A G T C A G T C A G C T A T G C A C T G A C T G A C T G A T C G C G T A A C G T A C G T
A C G T A C G T A C G T A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CCCGCCTCGGGGA--
NTNGCCTCAGGCNNN
 A G T C A T G C A G T C A C T G A G T C A G T C A G C T A T G C A C T G A C T G A C T G A T C G C G T A A C G T A C G T
G C T A C A G T G A C T A T C G A G T C A G T C A G C T T A G C T C G A T C A G A C T G T A G C C G T A C G T A C G A T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:6
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CCCGCCTCGGGGA-
--TGCCCNGGGGCA
 A G T C A T G C A G T C A C T G A G T C A G T C A G C T A T G C A C T G A C T G A C T G A T C G C G T A A C G T
A C G T A C G T G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CCCGCCTCGGGGA--
---GCCTCAGGGCAT
 A G T C A T G C A G T C A C T G A G T C A G T C A G C T A T G C A C T G A C T G A C T G A T C G C G T A A C G T A C G T
A C G T A C G T A C G T A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T

TFAP2A/MA0003.3/Jaspar

Match Rank:8
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CCCGCCTCGGGGA
--NGCCTGAGGCN
 A G T C A T G C A G T C A C T G A G T C A G T C A G C T A T G C A C T G A C T G A C T G A T C G C G T A
A C G T A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G

PB0102.1_Zic2_1/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CCCGCCTCGGGGA-
ACCCCCCCGGGGGGN
 A C G T A G T C A T G C A G T C A C T G A G T C A G T C A G C T A T G C A C T G A C T G A C T G A T C G C G T A A C G T
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G

PB0103.1_Zic3_1/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCCGCCTCGGGGA-
NCCCCCCCGGGGGGN
 A C G T A G T C A T G C A G T C A C T G A G T C A G T C A G C T A T G C A C T G A C T G A C T G A T C G C G T A A C G T
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G