Information for 1-AGARCAAAGGAGACGC (Motif 4)

C G T A A C T G C T G A T C G A T A G C G T C A G T C A C T G A A C T G A C T G C G T A A C T G C T G A G T A C C T A G G T A C
Reverse Opposite:
A C T G A G T C A C T G A G C T A G T C A C G T A G T C A G T C G A C T A C G T A C G T A T C G A G C T A G C T A G T C A C G T
p-value:1e-16
log p-value:-3.734e+01
Information Content per bp:1.764
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets30.9 +/- 13.0bp
Average Position of motif in Background50.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0061.1_Sox11_1/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGARCAAAGGAGACGC
ATAAGAACAAAGGACTA--
 A C G T A C G T A C G T C G T A A C T G C T G A T C G A T A G C G T C A G T C A C T G A A C T G A C T G C G T A A C T G C T G A G T A C C T A G G T A C
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGARCAAAGGAGACGC
AGAAGAACAAAGGACTA--
 A C G T A C G T A C G T C G T A A C T G C T G A T C G A T A G C G T C A G T C A C T G A A C T G A C T G C G T A A C T G C T G A G T A C C T A G G T A C
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T

Tcf7/MA0769.1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGARCAAAGGAGACGC
AAAGATCAAAGG------
 A C G T A C G T C G T A A C T G C T G A T C G A T A G C G T C A G T C A C T G A A C T G A C T G C G T A A C T G C T G A G T A C C T A G G T A C
C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G A C G T A C G T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AGARCAAAGGAGACGC
GGAACAAAGR------
 C G T A A C T G C T G A T C G A T A G C G T C A G T C A C T G A A C T G A C T G C G T A A C T G C T G A G T A C C T A G G T A C
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T

LEF1/MA0768.1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AGARCAAAGGAGACGC
AAAGATCAAAGGGTT---
 A C G T A C G T C G T A A C T G C T G A T C G A T A G C G T C A G T C A C T G A A C T G A C T G C G T A A C T G C T G A G T A C C T A G G T A C
T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGARCAAAGGAGACGC
-GAACAATGGN-----
 C G T A A C T G C T G A T C G A T A G C G T C A G T C A C T G A A C T G A C T G C G T A A C T G C T G A G T A C C T A G G T A C
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGARCAAAGGAGACGC
AAAACAAAGG------
 C G T A A C T G C T G A T C G A T A G C G T C A G T C A C T G A A C T G A C T G C G T A A C T G C T G A G T A C C T A G G T A C
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0040.1_Lef1_1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AGARCAAAGGAGACGC
NANAGATCAAAGGGNNN--
 A C G T A C G T A C G T C G T A A C T G C T G A T C G A T A G C G T C A G T C A C T G A A C T G A C T G C G T A A C T G C T G A G T A C C T A G G T A C
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T A C G T A C G T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AGARCAAAGGAGACGC
NNNAGATCAAAGGANNN--
 A C G T A C G T A C G T C G T A A C T G C T G A T C G A T A G C G T C A G T C A C T G A A C T G A C T G C G T A A C T G C T G A G T A C C T A G G T A C
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGARCAAAGGAGACGC
TAGGGCAAAGGTCA---
 A C G T C G T A A C T G C T G A T C G A T A G C G T C A G T C A C T G A A C T G A C T G C G T A A C T G C T G A G T A C C T A G G T A C
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T